Jena Picornavirus Page

Genus Aphthovirus

Genus Aphthovirus comprises 4 species:

Aphthovirus bogeli (formerly Bovine rhinitis A virus), 2 types,

Aphthovirus burrowsi (formerly Equine rhinitis A virus), 1 type,

Aphthovirus redi (formerly Bovine rhinitis B virus), 5 types,

Aphtovirus vesiculae (formerly Foot-and-mouth-disease virus), 7 types.

Genome layout: VPg-5'UTR^IRES-II[L^pro/1A-1B-1C-1D-2A^npgp/2B-2C^hel/3A-3B1^VPg-(3B2^VPg-3B3^VPg)-3C^pro-3D^pol]3'UTR-poly(A)

The following compilation is not comprehensive!
(There are more than 17,400 GenBank entries with term "organism Aphthovirus" as of 21 June 2026.)
The compilation below comprises 8 BRAV sequences, 19 ERAV sequences, 13 BRBV sequences and 567 FMDV sequences.
For a more comprehensive compilation, please refer to the Picornavirus homepage.

Go to Aphthovirus bogeli (BRAV)
Go to Aphthovirus burrowsi (ERAV)
Go to Aphthovirus redi (BRBV)
Go to Aphtovirus vesiculae (FMDV)

*Aphthovirus bogeli* (formerly Bovine rhinitis A virus)	BRAV-1 (formerly: bovine rhinovirus 1)	bovine rhinitis A virus 1 (BRAV-1) strain RS3X (cattle/UK/1969)	7267 nt	KT948520	Rai et al. 2016
	BRAV-1	bov/SD-1/GER	7245 nt	KP236128	Hause et al. 2015. Bovine rhinitis viruses are common in u.s. Cattle with bovine respiratory disease. PLoS ONE 10 (3), E0121998.
	BRAV-1	140032-1 (bov/USA/2013)	7499 nt	KP236129	Hause et al. 2015. Bovine rhinitis viruses are common in u.s. Cattle with bovine respiratory disease. PLoS ONE 10 (3), E0121998.
	BRAV-1	BSRI4 (bov/USA/2013)	7207 nt	KP264974	Ng et al. 2015. A metagenomics and case-control study to identify viruses associated with bovine respiratory disease. J. Virol. 89 (10), 5340-5349.
	BRAV-1	USII/02 (cattle/USA/2015)	7207 nt	KU159364	Mitra et al. 2016
	BRAV-1	BS16-2 (cattle/USA/2015)	6840 nt	KU159362	Mitra et al. 2016
	BRAV-2	H-1 (cattle/JPN/1984)	7250 nt	JN936206	Knowles & Wadsworth unpublished
	BRAV-2	MexB15 (cattle/Mexico/2015)	7030 nt	KU159363	Mitra et al. 2016
	BRAV-2	140032-1/USA/2013	7235 nt	KP236129	Hause et al. 2015. Bovine rhinitis viruses are common in u.s. Cattle with bovine respiratory disease. PLoS ONE 10 (3):E0121998.

Species	Type	Strain	Length	Acc. No.	Reference
*Aphthovirus borrowsi* (formerly Equine rhinitis A virus)	ERAV (formerly: ERV1)	equine rhinitis A virus (ERAV) PERV (horse/UK/c.62)	7734 nt	X96870	Wutz et al. 1996. Equine rhinovirus serotypes 1 and 2: relationship to each other and to aphthoviruses and cardioviruses. J. Gen. Virol. 77 (PT 8), 1719-1730.
			7734 nt	NC_003982	Wutz et al. 1996. Equine rhinovirus serotypes 1 and 2: relationship to each other and to aphthoviruses and cardioviruses. J. Gen. Virol. 77 (PT 8), 1719-1730.
			7782 nt	DQ272578	A. Aminev & A. Palmenberg, 2005; unpublished.
	ERAV	393/76 (South Australia/76)	CG	L43052	Li et al. 1996. Equine rhinovirus 1 is more closely related to foot-and-mouth disease virus than to other picornaviruses. Proc. Natl. Acad. Sci. U.S.A. 93 (3), 990-995.
	ERAV	393/76 (South Australia/76)	P1	AF347668	Varrasso et al. 2001, unpublished
	ERAV	967/90	P1	AF347669	Varrasso et al. 2001, unpublished
	ERAV	360007	P1	AF347672	Varrasso et al. 2001, unpublished
	ERAV	544/82	P1	AF347673	Varrasso et al. 2001, unpublished
	ERAV	4066/79	P1	AF347674	Varrasso et al. 2001, unpublished
	ERAV	V1722/70	P1	AF347675	Varrasso et al. 2001, unpublished
	ERAV	P200/75	P1	AF347676	Varrasso et al. 2001, unpublished
	ERAV	P346/75	P1	AF347677	Varrasso et al. 2001, unpublished
	ERAV	P1316/92	P1	AF347678	Varrasso et al. 2001, unpublished
	ERAV	D1305-03 (dromedary/Dubai/2003)	7681 nt	KM269483	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
	ERAV	Plowright (horse/USA)	7442 nt	DQ272127	A. Aminev & A. Palmenberg, 2005, unpublished.
	ERAV	U188 (horse/USA)	7442 nt	DQ272128	A. Aminev & A. Palmenberg, 2005, unpublished.
	ERAV	T10 (horse/USA)	7442 nt	DQ272577	A. Aminev & A. Palmenberg, 2005, unpublished.
	ERAV	T3 (horse/USA)	7778 nt	DQ268580	A. Aminev & A. Palmenberg, 2005, unpublished.
	ERAV	ERAV/ON/05 (horse/Canada/2005)	7839 nt	JX294351	Diaz-Mendez et al. 2013. Genomic analysis of a Canadian equine rhinitis A virus reveals low diversity among field isolates. Virus Genes 46 (2), 280-286.

Species	Type	Strain	Length	Acc. No.	Reference
*Aphthovirus redi* (formerly Bovine rhinitis B virus)	BRBV-1 (formerly: bovine rhinovirus 2)	bovine rhinitis B virus 1 (BRBV-1) strain EC 11 (cattle/United Kingdom)	7556 nt	EU236594	Hollister et al. 2008. Molecular and phylogenetic analyses of bovine rhinovirus type 2 shows it is closely related to foot-and-mouth disease virus. Virology 373 (2), 411-425.
	BRBV-1 (formerly: bovine rhinovirus 2)		7556 nt	NC_010354	Hollister et al. 2008
	BRBV-1	BSRI1 (cattle/USA/2013)	7359 nt	KP264980	Ng et al. 2015. A metagenomics and case-control study to identify viruses associated with bovine respiratory disease. J. Virol. 89 (10), 5340-5349.
	BRBV-1	BSRI3 (cattle/USA/2013)	7359 nt	KP2649750	Ng et al. 2015. A metagenomics and case-control study to identify viruses associated with bovine respiratory disease. J. Virol. 89 (10), 5340-5349.
	BRBV-1	140032-2 (cattle/USA/2013)	7499 nt	KP236130	Hause et al. 2015.Bovine rhinitis viruses are common in u.s. Cattle with bovine respiratory disease. PLoS ONE 10 (3), E0121998.
	BRBV-1	TCH8 (cattle/USA/2013)	7484 nt	KU168862	Tokarz & Lipkin unpublished
	BRBV-1	MexB48 (cattle/Mexico/2015)	7414 nt	KU159361	Mitra et al. 2016
	BRBV-2	MexB10 (cattle/Mexico/2015)	7271 nt	KU159357	Mitra et al. 2016
	BRBV-2	SWE1	7476 nt	KY432299	Blomstrom et al. Unpublished.
	BRBV-3	BSRI3 (cattle/USA/2013)	6995 nt	KP264975	Ng et al. 2015
	BRBV-4	TCH5 (cattle/USA/2013)	7474 nt	KU168861	Tokarz & Lipkin unpublished
	BRBV-4	MexB29 (cattle/Mexico/2015)	7189 nt	KU159358	Mitra et al. 2016
	BRBV-4	USII/19 (cattle/USA/2015)	4897 nt	KU159359	Mitra et al. 2016
	BRBV-5	MexB09 (cattle/Mexico/2015)	7494 nt	KU159360	Mitra et al. 2016

Species	Type	Strain	Length	Acc. No.	Reference
*Aphtovirus vesiculae* (formerly Foot-and-mouth disease virus)	FMDV-A₁	a1bayern iso41 (Germany: Bayern/1971)	8168 nt	AY593759	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂	a2spain iso7 (Spain/1969)	8162 nt	AY593774	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₃	a3mecklenburg iso81 (Germany/1968)	8162 nt	AY593776	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₄	a4wg iso72 (Germany/1972)	8173 nt	AY593779	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₄	a4spain iso62 (Spain)	8198 nt	AY593778	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₄	a4 W Germany iso42 (Germany)	8162 nt	AY593777	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₅	a5westerwald iso73 (Germany: Westerwald/1951)	8217 nt	AY593781	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₅	a5allier iso45 (France/1960)	8199 nt	AY593780	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₈	aparma iso55 (Italy/1962)	8198 nt	AY593792	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₁₀	a10holland iso82 (Netherlands/1942)	8204 nt	AY593752	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₁₂	UK/119/32 variant (United Kingdom)	7712 nt	M10975	Robertson et al. 1985. Nucleotide and amino acid sequence coding for polypeptides of foot-and-mouth disease virus type A12. J. Virol. 54 (3), 651-660.
	FMDV-A₁₂	a12valle 119 iso20, vaccine (United Kingdom/1932)	8204 nt	AY593752	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₁₄	a14 spain iso39 (Spain/1959)	8209 nt	AY593754	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₁₄	a13brazil iso75 (Brazil/1958)	8202 nt	AY593753	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₁₅	a15thailand iso43 (Thailand/1960)	8192 nt	AY593755	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₁₆	a16belem iso80 (Brazil/1959)	8202 nt	AY593756	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₁₇	a17 Aguarulbos iso83 (Brazil/1967)	8202 nt	AY593757	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₁₈	a18zulia iso40 (Venezuela: Zulia/1967)	8204 nt	AY593758	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₀	a20ussr iso10 (Russia/1964)	8152 nt	AY593760	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₁	a21kenya iso77 (Kenya/1964)	8161 nt	AY593761	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₂	a22turkey iso66 (Turkey/1965)	8202 nt	AY593765	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₂	a22iraq70 iso92 (Iraq/1970)	8203 nt	AY593764	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₂	a22iraq64 iso86 (Iraq/1964)	8204 nt	AY593763	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₂	a22iraq-95 iso95 (Iraq/1964)	8216 nt	AY593762	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₂	A22/550 Azerbaijan 65 (Azerbaijan/1965)	7820 nt	X74812	Sosnovtsev et al. 1993, unpublished.
	FMDV-A₂₂	Talasskiy (Kazakhstan/1999)	7477 nt	FJ623456	Strochkov et al. 2009. Unpublished.
	FMDV-A₂₃	a23kenya iso8 (Kenya/1965)	8202 nt	AY593766	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₄	a24cruzeiro iso71 (Brazil/1955)	8156 nt	AY593768	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₄	a24 argentina iso9 (Argentina/1965)	8195 nt	AY593767	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₅	a25 argentina iso38 (Argentina/1959)	8135 nt	AY593769	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₆	a26arg iso74 (Argentina/1966)	8115 nt	AY593770	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₇	a27colombia iso78 (Colombia/1967)	8200 nt	AY593771	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₈	a28 Turkey iso44 (Turkey/1972)	8158 nt	AY593772	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₂₉	a29peru iso37 (Peru/1969)	8202 nt	AY593773	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A₃₂	a32ven iso36 (Venezuela/1970)	8211 nt	AY593775	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
	FMDV-A	A/ATLauquen01 (cattle/Argentina/2001)	6999 nt	KX002205	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/ATLopez01 (cattle/Argentina/2001)	6999 nt	KX002204	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/AAreco01 (cattle/Argentina/2001)	6999 nt	KX002203	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/973_SL_Pede (cattle/Argentina/2001)	6999 nt	KX002202	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/915_SEst_Riv (cattle/Argentina/2001)	6999 nt	KX002201	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/820_Cor_Groca (cattle/Argentina/2001)	6999 nt	KX002200	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/548_LP_Guatrech (cattle/Argentina/2001)	6995 nt	KX002199	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/467_SFe_Irio (cattle/Argentina/2001)	6999 nt	KX002198	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/423_Cor_Union (cattle/Argentina/2001)	6999 nt	KX002197	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/39111_Cor_Gpaz (cattle/Argentina/2001)	6999 nt	KX002196	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/39064_SL_Ped (cattle/Argentina/2001)	6999 nt	KX002195	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/38950_For_Pat (cattle/Argentina/2001)	6999 nt	KX002194	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/258_ER_Diamante (cattle/Argentina/2001)	6999 nt	KX002193	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/2118_LPam_Lmahu (cattle/Argentina/2001)	6999 nt	KX002192	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/207_BsAs_Merced (cattle/Argentina/2001)	6999 nt	KX002191	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/2084_StEst_OjoAgua (cattle/Argentina/2001)	6999 nt	KX002190	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/2071_LPam_Chali (cattle/Argentina/2001)	6999 nt	KX002189	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/2063_Cor_Ccuat (cattle/Argentina/2001)	6999 nt	KX002188	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/2059_BsAs_Hirig (cattle/Argentina/2001)	6999 nt	KX002187	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/2027_Cor_Col (cattle/Argentina/2001)	6999 nt	KX002186	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/2026_Tuc_Tuc (cattle/Argentina/2001)	6999 nt	KX002185	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/1893_longMCH (cattle/Argentina/2001)	6999 nt	KX002184	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/1514_Lpam_HU (cattle/Argentina/2001)	6999 nt	KX002183	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/1452_longMCH (cattle/Argentina/2001)	6999 nt	KX002182	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/1441_BsAs_Lflores (cattle/Argentina/2001)	6999 nt	KX002181	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/1300_Bs_As_Gguido (cattle/Argentina/2001)	6999 nt	KX002180	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/1293_BsAs_Indio (cattle/Argentina/2001)	6999 nt	KX002179	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/129_LPam_Capital (cattle/Argentina/2001)	6999 nt	KX002178	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
	FMDV-A	A/1185_ER_Par (cattle/Argentina/2001)	6999 nt	KX002177	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
FMDV-A	A/1155_BsAs_MCh (cattle/Argentina/2001)	6999 nt	KX002176	Brito et al. 2016. Phylogeographic analysis of the 2000-2002 foot-and-mouth disease epidemic in Argentina. Infect. Genet. Evol. 41, 93-99.
FMDV-A	FMD/A/El-Fayoum/Egypt/2014 (cattle/Egypt/2014)	7281 nt	KP940474	Sobhy et al. 2015, unpublished.
FMDV-A	SAU/1/2015 (cattle/Saudi Arabia/2015)	8197 nt	KU127247	Bachanek-Bankowska et al. 2016. Complete Genome Sequence of a Serotype A Foot-and-Mouth Disease Virus from an Outbreak in Saudi Arabia during 2015. Genome Announc 4 (1), e01591-15.
FMDV-A	AIRN2005_WRL (cattle/Turkey/2005)	7649 nt	EF494486	Klein et al. 2007, unpublished.
FMDV-A	TUR/11/2013 (cattle/Turkey/2013)	8211 nt	KM268896	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV-A	A/SIN/PAK/L4/2008 (cattle/Pakistan/2008)	7635 nt	JN006722	Jamal et al. 2011. Molecular characterization of serotype Asia-1 foot-and-mouth disease viruses in Pakistan and Afghanistan; emergence of a new genetic Group and evidence for a novel recombinant virus. Infect. Genet. Evol. 11 (8), 2049-2062.
FMDV-A	A/VN/20/2009 (buffalo/Viet Nam/2009)	8215 nt	GQ406252	Le et al. 2010. Molecular characterization of serotype A foot-and-mouth disease viruses circulating in Vietnam in 2009. Vet. Microbiol. 144 (1-2), 58-66.
FMDV-A	A/VN/16/2009 (pig/Viet Nam/2009)	8207 nt	GQ406251	Le et al. 2010. Molecular characterization of serotype A foot-and-mouth disease viruses circulating in Vietnam in 2009. Vet. Microbiol. 144 (1-2), 58-66.
FMDV-A	A/VN/11/2009 (cattle/Viet Nam/2009)	8209 nt	GQ406250	Le et al. 2010. Molecular characterization of serotype A foot-and-mouth disease viruses circulating in Vietnam in 2009. Vet. Microbiol. 144 (1-2), 58-66.
FMDV-A	A/VN/03/2009 (cattle/Viet Nam/2009)	8209 nt	GQ406249	Le et al. 2010. Molecular characterization of serotype A foot-and-mouth disease viruses circulating in Vietnam in 2009. Vet. Microbiol. 144 (1-2), 58-66.
FMDV-A	A/VN/02/2009 (cattle/Viet Nam/2009)	8209 nt	GQ406248	Le et al. 2010. Molecular characterization of serotype A foot-and-mouth disease viruses circulating in Vietnam in 2009. Vet. Microbiol. 144 (1-2), 58-66.
FMDV-A	A/VN/09/2009 (cattle/Viet Nam/2009)	8207 nt	GQ406247	Le et al. 2010. Molecular characterization of serotype A foot-and-mouth disease viruses circulating in Vietnam in 2009. Vet. Microbiol. 144 (1-2), 58-66.
FMDV-A	4234 (cattle/Iraq/2009)	7415 nt	JN099689	Carillo et al, 2011, unpublished.
FMDV-A	4235 (cattle/Iraq/2009)	7617 nt	JN099688	Carillo et al, 2011, unpublished.
FMDV-A	4236 (cattle/Iraq/2009)	7415 nt	JN099690	Carillo et al, 2011, unpublished.
FMDV-A	4237 (cattle/Iraq/2009)	7417 nt	JN099691	Carillo et al, 2011, unpublished.
FMDV-A	4238 (cattle/Iraq/2009)	7415 nt	JN099692	Carillo et al, 2011, unpublished.
FMDV-A	4239 (cattle/Iraq/2009)	7415 nt	JN099693	Carillo et al, 2011, unpublished.
FMDV-A	4240 (cattle/Iraq/2009)	7531 nt	JN099694	Carillo et al, 2011, unpublished.
FMDV-A	4244 (cattle/Iraq/2009)	7531 nt	JN099695	Carillo et al, 2011, unpublished.
FMDV-A	4247 (cattle/Iraq/2009)	7416 nt	JN099696	Carillo et al, 2011, unpublished.
FMDV-A	4252 (cattle/Iraq/2009)	7573 nt	JN099697	Carillo et al, 2011, unpublished.
FMDV-A	4253 (cattle/Iraq/2009)	7418 nt	JN099703	Carillo et al, 2011, unpublished.
FMDV-A	4254 (cattle/Iraq/2009)	7531 nt	JN099698	Carillo et al, 2011, unpublished.
FMDV-A	4255 (cattle/Iraq/2009)	7531 nt	JN099699	Carillo et al, 2011, unpublished.
FMDV-A	4256 (cattle/Iraq/2009)	7417 nt	JN099700	Carillo et al, 2011, unpublished.
FMDV-A	4257 (cattle/Iraq/2009)	7417 nt	JN099701	Carillo et al, 2011, unpublished.
FMDV-A	4258 (cattle/Iraq/2009)	7417 nt	JN099702	Carillo et al, 2011, unpublished.
FMDV-A	A/HY/CHA/2013 (Bos grunniens/China/2013)	8103 nt	KT968663	Yang et al. 2015, unpublished.
FMDV-A	VIT_4/2004 (Viet Nam/2004)	8204 nt	HQ268509	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-A	IND 17/2009 (cattle/India/2009)	8140 nt	HQ832592	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 437/2008 (cattle/India/2008)	8182 nt	HQ832591	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 245/2007 (cattle/India/2007)	8183 nt	HQ832590	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 109/2006 (cattle/India/2006)	8142 nt	HQ832589	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 88/2006 (cattle/India/2006)	8178 nt	HQ832588	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 50/2006 (cattle/India/2006)	8190 nt	HQ832587	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 43/2006 (India/2006)	8183 nt	HQ832586	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 26/2006 (India/2006)	8183 nt	HQ832585	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 22/2006 (cattle/India/2006)	8097 nt	HQ832584	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 447/2005 (cattle/India/2005)	8181 nt	HQ832583	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 249/2004 (cattle/India/2004)	8179 nt	HQ832582	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 64/2004 (cattle/India/2004)	8095 nt	HQ832581	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 818/2003 (cattle/India/2003)	8179 nt	HQ832580	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 281/2003 (cattle/India/2003)	8177 nt	HQ832579	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 161/2003 (cattle/India/2003)	8174 nt	HQ832578	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 110/1999 (cattle/India/1999)	8180 nt	HQ832577	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 110/1999 (cattle/India/1999)	8180 nt	HQ832577	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	IND 21/1990 (cattle/India/1990)	8187 nt	HQ832576	Subramaniam et al. 2011. Comparative complete genome analysis of Indian type A foot-and-mouth disease virus field isolates. Virus Genes 43 (2), 224-233.
FMDV-A	A/VN/T11D/2013 (cattle/Viet Nam/2013)	8229 nt	KJ608371	Hwang et al. 2015. Complete Genome Sequence of a Foot-and-Mouth Disease Virus of Serotype A Isolated from Vietnam in 2013. Genome Announc 3 (4), e00948-15.
FMDV-A	TUR_004/2003	7826 nt	JF749848	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-A	Egypt/2006	8195 nt	JF749843	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-A	Turkey/2006	7849 nt	JF749841	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-A	Malaysia 97	8280 nt	KJ933864	Lee et al. 2014, unpublished.
FMDV-A	A/Pocheon/001/KOR/2010 (cattle/South Korea/2010)	8131 nt	KC588943	Lee et al. 2013, unpublished.
FMDV-A	EGY 1/2012 (Egypt/2012)	7295 nt	KC440882	Xu et al. 2013, unpublished.
FMDV-A	EGY 9/2011 (Egypt/2011)	7281 nt	KC440881	Xu et al. 2013, unpublished.
FMDV-A	MAY/3/2007 (cattle/Malaysia/2007)	8192 nt	HQ632773	Abdul-Hamid et al. 2011. Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia. Virus Genes 43 (1), 41-45.
FMDV-A	IND40/00 (cattle/India/1999)	8199 nt	HM854025	Pawar et al. 2010, unpublished.
FMDV-A	IND17/82 (cattle/India/1982)	8158 nt	HM854024	Mohapatra et al. 2010, unpublished.
FMDV-A	IND258/99 (cattle/India/1999)	8204 nt	HM854023	Mohapatra et al. 2010, unpublished.
FMDV-A	IND17/77 (cattle/India/1977)	8207 nt	HM854022	Mohapatra et al. 2010, unpublished.
FMDV-A	IND81/00 (cattle/India/2000)	8112 nt	HM854021	Mohapatra et al. 2010, unpublished.
FMDV-A	PAK5/2006 (cattle/Pakistan/2006)	7626 nt	EF494488	Klein et al. 2007, unpublished.
FMDV-A	PAK1 (cattle/Pakistan/2006)	7656 nt	EF494488	Klein et al. 2007, unpublished.
FMDV-A	avenceslau iso70 (Brazil/1979)	8199 nt	AY593803	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	A Uruguay 2001 iso98 (Uruguay/2001)	8201 nt	AY593802	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	A30 Uruguay/68 iso90 (Uruguay/1968)	8201 nt	AY593801	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	asabana iso68 (Colombia/1985)	8201 nt	AY593794	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	aphilippines iso50 (Philippines/1975)	8203 nt	AY593793	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	airan iso105 (Iran/1998)	8280 nt	AY593791	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	acanefa iso48 (Argentina/1961)	8132 nt	AY593789	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	abrazil iso67 (Brazil/1958)	8217 nt	AY593788	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	abage iso63 (Brazil/1977)	8196 nt	AY593787	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	aarg Trenquelauquen iso103 (Argentina/2001)	8209 nt	AY593786	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	aargp64 iso100, 64th passage (Argentina/2001)	8196 nt	AY593785	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	aargp55 iso99, 55th passage (Argentina/2001)	8196 nt	AY593784	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	aarg2001 iso93 (Argentina/2001)	8196 nt	AY593783	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	a argentina 2000 iso104 (Argentina/2000)	8200 nt	AY593782	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-A	Lindholm 1.3,PAK3/2006 (Pakistan/2006)	7623 nt	EF117837	Kleinet al. 2006, unpublished.
FMDV-O₁	Kaufbeuren (O1K)	7804 nt	X00871	Forss et al. 1984.Nucleotide sequence and genome organization of foot-and-mouth disease virus. Nucleic Acids Res. 12 (16), 6587-6601.
FMDV-O₁	O1Campos (Brazil)	8183 nt	AJ320488	Pereda et al. 2002. Full length nucleotide sequence of foot-and-mouth disease virus strain O1 Campos/Bra/58. Brief report. Arch. Virol. 147 (11), 2225-2230.
FMDV-O₁	O1 Geshure	6996 nt	AF189157	Benvenisti et al. 1999. Unpublished.
FMDV-O₁	O1/BFS 1860/UK/67 (MAH) (cattle/United Kingdom/1967)	8176 nt	EU448370	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O₁	O1/BFS 1860/UK/67 (IAH2) (cattle/United Kingdom/1967)	8176 nt	EU448369	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O₁	O1/BFS 1860/UK/67 (IAH1) (cattle/United Kingdom/1967)	8176 nt	EU448368	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O₁	o1valle iso64 (Argentina/1939)	8166 nt	AY593825	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1skr iso85 (South Korea/2000)	8199 nt	AY593824	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1manisa iso87 (Turkey/1969)	8206 nt	AY593823	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1m11 iso57 (vaccine strain)	8164 nt	AY593822	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1caseros iso35 (Argentina/1967)	8204 nt	AY593821	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1canefa iso59 (Argentina/1964)	8195 nt	AY593820	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1campos94 iso94 (Argentina)	8197 nt	AY593819	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1campos iso96 (Argentina/1958)	8195 nt	AY593818	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1brugge iso79 (Belgium/1973)	8195 nt	AY593817	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1bfs46 iso46 (United Kingdom)	8194 nt	AY593816	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1bfs iso18 (United Kingdom)	8194 nt	AY593815	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁	o1argentina iso5 (Argentina/1965)	8199 nt	AY593814	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₂	o2brescia iso17 (Italy/1947)	8166 nt	AY593826	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₃	o3venezuela iso15 (Venezuela/1971)	8169 nt	AY593827	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₅	o5india iso34 (India/1962)	8157 nt	AY593828	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₆	o6pirbright iso58 (United Kingdom/1965)	8201 nt	AY593829	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₇	o7poland iso49 (Poland/1959)	8200 nt	AY593830	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁₀	o10phil71 iso76 (Philippines/1958)	8201 nt	AY593812	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁₀	o10phil54 iso54 (Philippines/1958)	8201 nt	AY593811	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O₁₁	o11indonesia iso52 (Indonesia/1962)	8111 nt	AY593813	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O	WFL (China)	8155 nt	EF175732	Ren et al. 2007. Construction of the genomic full-length cDNA of foot-and-mouth disease virus WFL strain. Chin. J. Prev. Vet. Med. (2007) In press.
FMDV-O	UKG/126/2001 (pig/United Kingdom/2001)	8193 nt	DQ404179	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/127/2001 (pig/United Kingdom/2001)	8193 nt	DQ404178	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/128/2001 (pig/United Kingdom/2001)	8193 nt	DQ404177	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/150/2001 (cattle/United Kingdom/2001)	8193 nt	DQ404176	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/150/2001 (cattle/United Kingdom/2001)	8193 nt	DQ404175	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/438/2001 (sheep/Ireland/2001)	8193 nt	DQ404174	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/220/2001 (cattle/United Kingdom/2001)	8195 nt	DQ404173	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/621/2001 (cattle/United Kingdom/2001)	8193 nt	DQ404172	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/4569/2001 (sheep/United Kingdom/2001)	8193 nt	DQ404171	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/7675/2001 (sheep/United Kingdom/2001)	8193 nt	DQ404170	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/7038/2001 (sheep/United Kingdom/2001)	8193 nt	DQ404169	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/9011/2001 (cattle/United Kingdom/2001)	8193 nt	DQ404168	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/9327/2001 (sheep/United Kingdom/2001)	8188 nt	DQ404167	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/9788/2001 (cattle/United Kingdom/2001)	8193 nt	DQ404166	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/9964/2001 (cattle/United Kingdom/2001)	8193 nt	DQ404165	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/11676/2001 (cattle/United Kingdom/2001)	8193 nt	DQ404164	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/14339/2001 (cattle/United Kingdom/2001)	8193 nt	DQ404163	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/14476/2001 (sheep/United Kingdom/2001)	8192 nt	DQ404162	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/14476/2001 (cattle/United Kingdom/2001)	8189 nt	DQ404161	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/14524/2001 (cattle/United Kingdom/2001)	8187 nt	DQ404160	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/14603/2001 (cattle/United Kingdom/2001)	8188 nt	DQ404159	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	UKG/15101/2001 (sheep/United Kingdom/2001)	8187 nt	DQ404158	Cottam et al. 2006. Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001. J. Virol. 80 (22), 11274-11282.
FMDV-O	OGBF15 (cattle/China)	8168 nt	DQ478936	Gu et al. 2006, unpublished.
FMDV-O	lz (China)	8104 nt	DQ248888	Ma et al. 2005, unpublished.
FMDV-O	ON/NY00	7731 nt	AY333431	Zheng et al. 2003, unpublished.
FMDV-O	OMIII	8083 nt	AY359854	Chang et al. 2003, unpublished.
FMDV-O	China/1/99(Tibet)	8173 nt	AF506822	Zhang et al. 2004. Sequencing and analysis for the full-length genome RNA of foot-and-mouth disease virus China/99. Sci. China, C, Life Sci. 47 (1), 74-81.
FMDV-O	pig/Taiwan/1997	8134 nt	AF308157	Beard & Mason. 2000. Genetic determinants of altered virulence of Taiwanese foot-and-mouth disease virus. J. Virol. 74 (2), 987-991.
FMDV-O	HLJOC12/03 (China)	7767 nt	DQ119643	Zhu et al. 2006, unpublished.
FMDV-O	O/JPN/2000 (cattle/Japan: Miyazaki/2000)	7822 nt	AB079061	Kanno et al. 2002. The complete nucleotide sequence of the PanAsia strain of foot-and-mouth disease virus isolated in Japan. Virus Genes 25 (2), 119-125.
FMDV-O	O/Uganda/2006 (cattle/Uganda/2006)	8189 nt	EF611987	Klein et al. 2007, unpublished.
FMDV-O	UKG/35/2001 (United Kingdom)	8183 nt	AJ539141	Mason et al. 2003. Comparisons of the complete genomes of Asian, African and European isolates of a recent foot-and-mouth disease virus type O pandemic strain (PanAsia). J. Gen. Virol. 84 (PT 6), 1583-1593.
FMDV-O	SAR/19/2000 (South Africa)	8184 nt	AJ539140	Mason et al. 2003. Comparisons of the complete genomes of Asian, African and European isolates of a recent foot-and-mouth disease virus type O pandemic strain (PanAsia). J. Gen. Virol. 84 (PT 6), 1583-1593.
FMDV-O	SKR/2000 (South Korea)	8182 nt	AJ539139	Mason et al. 2003. Comparisons of the complete genomes of Asian, African and European isolates of a recent foot-and-mouth disease virus type O pandemic strain (PanAsia). J. Gen. Virol. 84 (PT 6), 1583-1593.
FMDV-O	Tibet/CHA/99 (China)	8183 nt	AJ539138	Mason et al. 2003. Comparisons of the complete genomes of Asian, African and European isolates of a recent foot-and-mouth disease virus type O pandemic strain (PanAsia). J. Gen. Virol. 84 (PT 6), 1583-1593.
FMDV-O	TAW/2/99 BOV (Taiwan)	8183 nt	AJ539137	Mason et al. 2003. Comparisons of the complete genomes of Asian, African and European isolates of a recent foot-and-mouth disease virus type O pandemic strain (PanAsia). J. Gen. Virol. 84 (PT 6), 1583-1593.
FMDV-O	TAW/2/99 TC (Taiwan)	8183 nt	AJ539136	Mason et al. 2003. Comparisons of the complete genomes of Asian, African and European isolates of a recent foot-and-mouth disease virus type O pandemic strain (PanAsia). J. Gen. Virol. 84 (PT 6), 1583-1593.
FMDV-O	FRA/1/2001 (France: Mayenne)	8234 nt	AJ633821	Nobiron et al. 2005. The nucleotide sequence of foot-and-mouth disease virus O/FRA/1/2001 and comparison with its British parental strain O/UKG/35/2001. Virus Res. 108 (1-2), 225-229.
FMDV-O	ZIM_004/2002	6664 nt	JF749863	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-O	Chu-Pei (Taiwan)	7733 nt	AF026168	Tsai et al. 2000. Molecular epidemiological studies on foot-and-mouth disease type O Taiwan viruses from the 1997 epidemic. Vet. Microbiol. 74 (3), 207-216.
FMDV-O	O/JPN/2010 290-1E (cattle/Japan: Miyazaki/2010)	8216 nt	LC036265	Kanno et al. 2015, unpublished.
FMDV-O	Nari/UVAS-Pak/2005 (Bubalus bubalis/Pakistan/2005)	8157 nt	KT003716	Shabbir & Munir. 2015. Complete Genome Sequence Analysis of a Vaccine Strain of Foot-and-Mouth Disease Virus Serotype O from Pakistan. Genome Announc 3 (5), e00958-15.
FMDV-O	FMD/O/Dakahlia/Egypt/2014 (cattle/Egypt/2014)	7281 nt	KP940473	Sobhy et al. 2015, unpublished.
FMDV-O	O/UKG (cattle/United Kingdom)	8183 nt	KR265075	Parthiban et al. 2015. Virus Excretion from Foot-And-Mouth Disease Virus Carrier Cattle and Their Potential Role in Causing New Outbreaks. PLoS ONE 10 (6), E0128815.
FMDV-O	perssistent/OUKG/84dpc (cattle/United Kingdom)	8183 nt	KR265074	Parthiban et al. 2015. Virus Excretion from Foot-And-Mouth Disease Virus Carrier Cattle and Their Potential Role in Causing New Outbreaks. PLoS ONE 10 (6), E0128815.
FMDV-O	persistent/OUKG/77dpc (cattle/United Kingdom)	8183 nt	KR265073	Parthiban et al. 2015. Virus Excretion from Foot-And-Mouth Disease Virus Carrier Cattle and Their Potential Role in Causing New Outbreaks. PLoS ONE 10 (6), E0128815.
FMDV-O	persistent/OUKG/49dpc (cattle/United Kingdom)	8183 nt	KR265072	Parthiban et al. 2015. Virus Excretion from Foot-And-Mouth Disease Virus Carrier Cattle and Their Potential Role in Causing New Outbreaks. PLoS ONE 10 (6), E0128815.
FMDV-O	O/UKG/1709/2007 (IP7) (cattle/United Kingdom/2007)	8176 nt	KJ560309	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1701/2007 (IP7) (cattle/United Kingdom/2007)	8176 nt	KJ560307	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1698/2007 (IP7) (cattle/United Kingdom/2007)	8176 nt	KJ560306	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1694/2007 (IP7) (cattle/United Kingdom/2007)	8176 nt	KJ560305	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1693/2007 (IP7) (cattle/United Kingdom/2007)	8176 nt	KJ560304	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1684/2007 (IP7) (cattle/United Kingdom/2007)	8176 nt	KJ560303	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1488/2007 (IP6b) (cattle/United Kingdom/2007)	8176 nt	KJ560302	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1485/2007 (IP6b) (cattle/United Kingdom/2007)	8176 nt	KJ560301	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/805/2007 (IP4b) (cattle/United Kingdom/2007)	8176 nt	KJ560296	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1170/2007 (IP3c) (cattle/United Kingdom/2007)	8176 nt	KJ560295	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/650/2007 (IP3b) (cattle/United Kingdom/2007)	8176 nt	KJ560294	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/649/2007 (IP3b) (cattle/United Kingdom/2007)	8176 nt	KJ560293	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/648/2007 (IP3b) (cattle/United Kingdom/2007)	8176 nt	KJ560292	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/647/2007 (IP3b) (cattle/United Kingdom/2007)	8176 nt	KJ560291	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/645/2007 (IP3b) (cattle/United Kingdom/2007)	8176 nt	KJ560290	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/644/2007 (IP3b) (cattle/United Kingdom/2007)	8176 nt	KJ560289	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/642/2007 (IP3b) (cattle/United Kingdom/2007)	8176 nt	KJ560288	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/132/2007 (IP2c) (cattle/United Kingdom/2007)	8176 nt	KJ560286	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/97/2007 (IP2b) (cattle/United Kingdom/2007)	8176 nt	KJ560285	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/96/2007 (IP2b) (cattle/United Kingdom/2007)	8176 nt	KJ560284	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/94/2007 (IP2b) (cattle/United Kingdom/2007)	8176 nt	KJ560282	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/92/2007 (IP2b) (cattle/United Kingdom/2007)	8176 nt	KJ560281	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/91/2007 (IP2b) (cattle/United Kingdom/2007)	8176 nt	KJ560280	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/32/2007 (IP1b) (cattle/United Kingdom/2007)	8176 nt	KJ560279	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/13/2007 (IP1b) (cattle/United Kingdom/2007)	8176 nt	KJ560278	Valdazo-Gonzalez et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	Kumi District (cattle/Uganda/2002)	7619 nt	FJ461344	Christensen et al. 2004. Characterisation of a new type O lineage of FMDV from Uganda with atypical clinical manifestations in domestic cattle. (in) PROCEEDINGS OF THE OPEN SESSION OF THE EUFMD RESEARCH GROUP APPENDIX 23: 159-161; Chania, Crete, Greece.
FMDV-O	Akesu/58 (cattle/China)	8147 nt	AF511039	Li et al. 2007. The complete genome sequence of foot-and-mouth disease virus O/Akesu/58 strain and its some molecular characteristics. Arch. Virol. 152 (11), 2079-2085.
FMDV-O	UKG/2366/2007 (IP8) (cattle/United Kingdom/2007)	8176 nt	EU448381	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/1679/2007 (IP7) (cattle/United Kingdom/2007)	8176 nt	EU448380	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/1484/2007 (IP6b) (cattle/United Kingdom/2007)	8176 nt	EU448379	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/1421/2007 (IP5) (cattle/United Kingdom/2007)	8176 nt	EU448378	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/800/2007 (IP4b) (cattle/United Kingdom/2007)	8176 nt	EU448377	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/1153/2007 (IP3c) (cattle/United Kingdom/2007)	8176 nt	EU448376	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/643/2007 (IP3b) (cattle/United Kingdom/2007)	8176 nt	EU448375	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/150/2007 (IP2c) (cattle/United Kingdom/2007)	8176 nt	EU448374	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/93/2007 (IP2b) (cattle/United Kingdom/2007)	8176 nt	EU448373	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/7B/2007 (IP1b) (cattle/United Kingdom/2007)	8176 nt	EU448372	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/7/2007 (IP1b) (cattle/United Kingdom/2007)	8176 nt	EU448371	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	UKG/1421/2007 (IP5) (cattle/United Kingdom/2007)	8176 nt	EU448378	Cottam et al. 2008. Transmission pathways of foot-and-mouth disease virus in the United Kingdom in 2007. PLoS Pathog. 4 (4), e1000050.
FMDV-O	O/Ecu 2010-350 (cattle/Ecuador/2010)	7594 nt	KX353623	Duque et al. 2016. Protection induced by a commercial bivalent vaccine against Foot-and-Mouth Disease 2010 field virus from Ecuador. Vaccine, in press.
FMDV-O	O/SKR/JC/2014 (pig/South Korea/2014)	8172 nt	KX162590	Lee et al. 2016. Unpublished.
FMDV-O	O/K/48/2005	7258 nt	HM625673	Balinda et al. 2010.Phylogenetic analyses of the polyprotein coding sequences of serotype O foot-and-mouth disease viruses in East Africa: evidence for interserotypic recombination. Virol. J. 7 (1), 199.
FMDV-O	O/K/52/1992	7253 nt	HM625674	Balinda et al. 2010.Phylogenetic analyses of the polyprotein coding sequences of serotype O foot-and-mouth disease viruses in East Africa: evidence for interserotypic recombination. Virol. J. 7 (1), 199.
FMDV-O	O/K/109/2000	7255 nt	HM625675	Balinda et al. 2010.Phylogenetic analyses of the polyprotein coding sequences of serotype O foot-and-mouth disease viruses in East Africa: evidence for interserotypic recombination. Virol. J. 7 (1), 199.
FMDV-O	O/K/117/1999	7254 nt	HM625676	Balinda et al. 2010.Phylogenetic analyses of the polyprotein coding sequences of serotype O foot-and-mouth disease viruses in East Africa: evidence for interserotypic recombination. Virol. J. 7 (1), 199.
FMDV-O	O/U/25/2006	7260 nt	HM625677	Balinda et al. 2010.Phylogenetic analyses of the polyprotein coding sequences of serotype O foot-and-mouth disease viruses in East Africa: evidence for interserotypic recombination. Virol. J. 7 (1), 199.
FMDV-O	PanAsia O/SKR/2002	8272 nt	AH012984	Oem et al. 2004. Comparison and analysis of the complete nucleotide sequence of foot-and-mouth disease viruses from animals in Korea and other PanAsia strains. Virus Genes 29 (1), 63-71.
FMDV-O	PanAsia O/SKR/2000	8267 nt	AH012985	Oem et al. 2004. Comparison and analysis of the complete nucleotide sequence of foot-and-mouth disease viruses from animals in Korea and other PanAsia strains. Virus Genes 29 (1), 63-71.
FMDV-O	persistent O/UKG/UV13/49dpc	8183 nt	KR401161	Parthiban et al. 2015. Complete Genome Sequences of Serotype O Foot-and-Mouth Disease Viruses Recovered from Experimental Persistently Infected Cattle. Genome Announc 3 (4), e00606-15.
FMDV-O	persistent/OUKG/91dpc	8183 nt	JX947858	Parthiban et al. 2015. Complete Genome Sequences of Serotype O Foot-and-Mouth Disease Viruses Recovered from Experimental Persistently Infected Cattle. Genome Announc 3 (4), e00606-15.
FMDV-O	persistent/OUKG/98dpc	8183 nt	JX947859	Parthiban et al. 2015. Complete Genome Sequences of Serotype O Foot-and-Mouth Disease Viruses Recovered from Experimental Persistently Infected Cattle. Genome Announc 3 (4), e00606-15.
FMDV-O	TUR/12/2013 (cattle/Turkey/2013)	8215 nt	KM268895	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV-O	UKG/14597/2011 (cattle/UK/2001)	8113 nt	KM257065	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV-O	UKG/4998/2011 (cattle/UK/2001)	8177 nt	KM257064	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV-O	UKG/1734/2011 (cattle/UK/2001)	8183 nt	KM257063	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV-O	UKG/1558/2011 (cattle/UK/2001)	8183 nt	KM257062	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV-O	UKG/1450/2011 (cattle/UK/2001)	8183 nt	KM257061	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV-O	HKN15/2010 (swine/Hong Kong/2010)	8190 nt	KF112889	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	DRK/31/2011 (cattle/North Korea/2011)	8189 nt	KF112888	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	SKR/5/2010 (swine/South Korea/2010)	8192 nt	KF112887	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	SKR/4/2010 (cattle/South Korea/2010)	8190 nt	KF112886	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	JPN/1/2010 (cattle/Japan/2010)	8192 nt	KF112885	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	RUS/Aug 2010 (cattle/Russia/2010)	8187 nt	KF112884	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	RUS/Jul 2010 (swine/Russia/2010)	8190 nt	KF112883	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	MOG/C-10/2010 (cattle/Mongolia/2010)	8188 nt	KF112882	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	MOG/7/2010 (cattle/Mongolia/2010)	8189 nt	KF112881	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	MYA/5/2009 (cattle/Myanmara/2009)	8188 nt	KF112880	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	TAI/22/2009 (swine/Thailand/2009)	8189 nt	KF112879	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	HKN/20/2010 (swine/Hong Kong/2010)	8123 nt	HM229661	Valdao-Gonzales et al. 2013. Multiple introductions of serotype O foot-and-mouth disease viruses into East Asia in 2010-2011. Vet. Res. 44 (1), 76.
FMDV-O	Panasia III O/ISL/PAK/L1573/2009 (cattle/Afghanistan/2009)	7622 nt	HQ113232	Belsham et al. 2011. Rescue of Foot-and-Mouth Disease Viruses That Are Pathogenic for Cattle from Preserved Viral RNA Samples. PLoS ONE 6 (1), e14621.
FMDV-O	O/U/312/2006 (Ankole cow/Uganda/2006)	7635 nt	HM191257	Balinda et al. 2010. Phylogenetic analyses of the polyprotein coding sequences of serotype O foot-and-mouth disease viruses in East Africa: evidence for interserotypic recombination. Virol. J. 7 (1), 199.
FMDV-O	O/VN/GL13/2006 (cattle/Viet Nam/2006)	7513 nt	GU125650	Le et al. 2010. Heterogeneity and genetic variations of serotypes O and Asia 1 foot-and-mouth disease viruses isolated in Vietnam. Vet. Microbiol. 145 (3-4), 220-229.
FMDV-O	O/VN/SL21/2006 (cattle/Viet Nam/2006)	7863 nt	GU125649	Le et al. 2010. Heterogeneity and genetic variations of serotypes O and Asia 1 foot-and-mouth disease viruses isolated in Vietnam. Vet. Microbiol. 145 (3-4), 220-229.
FMDV-O	O/VN/SL01/2006 (buffalo/Viet Nam/2006)	7847 nt	GU125648	Le et al. 2010. Heterogeneity and genetic variations of serotypes O and Asia 1 foot-and-mouth disease viruses isolated in Vietnam. Vet. Microbiol. 145 (3-4), 220-229.
FMDV-O	O/VN/SL22/2006 (cattle/Viet Nam/2006)	7851 nt	GU125647	Le et al. 2010. Heterogeneity and genetic variations of serotypes O and Asia 1 foot-and-mouth disease viruses isolated in Vietnam. Vet. Microbiol. 145 (3-4), 220-229.
FMDV-O	GRE/23/94 (cattle/Morocco/2015)	8161 nt	KU726614	King et al. 2016. Genome Sequencing of Foot-and-Mouth Disease Virus Type O Isolate GRE/23/94. Genome Announc 4 (3), e00353-16.
FMDV-O	MOR/1/2015 (sheep/Greece/1994)	8115 nt	KU291242	Bachanek-Bankowska et al. 2016. Genome Sequence of Foot-and-Mouth Disease Virus Serotype O Isolated from Morocco in 2015. Genome Announc 4 (2), e01746-15.
FMDV-O	O/UKG/1704/2007 (IP7) (cattle/United Kingdom/2007)	8176 nt	KJ560308	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1426/2007 (IP5) (sheep/United Kingdom/2007)	8176 nt	KJ560300	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1425/2007 (IP5) (sheep/United Kingdom/2007)	8176 nt	KJ560299	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1419/2007 (IP5) (sheep/United Kingdom/2007)	8176 nt	KJ560298	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/1418/2007 (IP5) (sheep/United Kingdom/2007)	8176 nt	KJ560297	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/158/2007 (IP2c) (cattle/United Kingdom/2007)	8176 nt	KJ560287	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/95/2007 (IP2b) (cattle/United Kingdom/2007)	8176 nt	KJ560283	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/11/2007 (IP1b) (cattle/United Kingdom/2007)	8176 nt	KJ560277	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	O/UKG/9/2007 (IP1b) (cattle/United Kingdom/2007)	8176 nt	KJ560276	Valdazo-Gonzales et al. 2015. The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infect. Genet. Evol. 32, 440-448.
FMDV-O	IND250(541)/2013 (buffalo/India/2013)	8200 nt	KJ825809	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	IND141(306)/2013 (cattle/India/2013)	8200 nt	KJ825808	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	IND26(54)/2014 (cattle/India/2014)	8200 nt	KJ825807	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	IND811(1552)/2013 (cattle/India/2013)	8200 nt	KJ825806	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	IND341(707)/2013 (cattle/India/2013)	8199 nt	KJ825805	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	IND298(634)/2013 (cattle/India/2013)	8200 nt	KJ825804	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	IND139(302)/2013 (cattle/India/2013)	8178 nt	KJ825803	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	IND142(311)/2013 (cattle/India/2013)	8197 nt	KJ825802	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	IND142(310)/2013 (cattle/India/2013)	8199 nt	KJ825801	Subramaniam et al. 2015. Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol. 30, 59-64.
FMDV-O	SAU/3/2013 (cattle/Saudi Arabia/2013)	8160 nt	KJ206910	Valdazo-Gonzalez et al. 2014. Genome Sequences of Foot-and-Mouth Disease Virus O/ME-SA/Ind-2001 Lineage from Outbreaks in Libya, Saudi Arabia, and Bhutan during 2013. Genome Announc 2 (2), e00242-14.
FMDV-O	LIB/2/2013 (cattle/Libya/2013)	8159 nt	KJ206909	Valdazo-Gonzalez et al. 2014. Genome Sequences of Foot-and-Mouth Disease Virus O/ME-SA/Ind-2001 Lineage from Outbreaks in Libya, Saudi Arabia, and Bhutan during 2013. Genome Announc 2 (2), e00242-14.
FMDV-O	BHU/1/2013 (cattle/Bhutan/2013)	8165 nt	KJ206908	Valdazo-Gonzalez et al. 2014. Genome Sequences of Foot-and-Mouth Disease Virus O/ME-SA/Ind-2001 Lineage from Outbreaks in Libya, Saudi Arabia, and Bhutan during 2013. Genome Announc 2 (2), e00242-14.
FMDV-O	MAY_002/2004	7253 nt	JF749852	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-O	IRN_073/2001	8197 nt	JF749851	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-O	BHU_27/2004 (Bhutan/2004)	8197 nt	HQ268524	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-O	PAK/45/2008 (buffalo/Pakistan/2008)	8285 nt	GU384683	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-O	PAK/44/2008 (cattle/Pakistan/2008)	8280 nt	GU384682	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV-O	BFS 89/68 (sheep/United Kingdom/1968)	8186 nt	JX869188	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 86/68 (cattle/United Kingdom/1968)	8186 nt	JX869187	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 89/68 (cattle/United Kingdom/1968)	8186 nt	JX869186	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 63/68 (cattle/United Kingdom/1968)	8186 nt	JX869185	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 45/68 (cattle/United Kingdom/1968)	8186 nt	JX869184	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 41/68 (cattle/United Kingdom/1968)	8183 nt	JX869183	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 11/68 (cattle/United Kingdom/1968)	8186 nt	JX869182	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 1950 (cattle/United Kingdom/1967)	8186 nt	JX869181	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 1889 (cattle/United Kingdom/1967)	8186 nt	JX869180	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 1848 (cattle/United Kingdom/1967)	8186 nt	JX869179	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 1836 (cattle/United Kingdom/1967)	8187 nt	JX869178	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BFS 1810A (cattle/United Kingdom/1967)	8187 nt	JX869177	Wright et al. 2013. Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom. Infect. Genet. Evol. 20, 230-238.
FMDV-O	BAN_GA_Sa-197_2013 (cattle/Bangladesh/2013)	8187 nt	KJ754939	Ullah et al. 2014. Complete Genome Sequence of Foot-and-Mouth Disease Virus Type A Circulating in Bangladesh. Genome Announc 2 (3), e00506-14.
FMDV-O	Yangju-p26 (pig/South Korea/2010)	8238 nt	KF501488	Park et al. 2014. Protection to homologous and heterologous challenge in pigs immunized with vaccine against foot-and-mouth disease type O caused an epidemic in East Asia during 2010/2011. Vaccine 32 (16), 1882-1889.
FMDV-O	Yangju (pig/South Korea/2010)	8238 nt	KF501487	Park et al. 2014. Protection to homologous and heterologous challenge in pigs immunized with vaccine against foot-and-mouth disease type O caused an epidemic in East Asia during 2010/2011. Vaccine 32 (16), 1882-1889.
FMDV-O	Andong-p23 (pig/South Korea/2010)	8238 nt	KF501486	Park et al. 2014. Protection to homologous and heterologous challenge in pigs immunized with vaccine against foot-and-mouth disease type O caused an epidemic in East Asia during 2010/2011. Vaccine 32 (16), 1882-1889.
FMDV-O	Andong (South Korea/2010)	8238 nt	KC503937	Park et al. 2014. Protection to homologous and heterologous challenge in pigs immunized with vaccine against foot-and-mouth disease type O caused an epidemic in East Asia during 2010/2011. Vaccine 32 (16), 1882-1889.
FMDV-O	BAN/NA/Ha-156/2013 (cattle/Bangladesh/2013)	8131 nt	KF985189	Sultan et al. 2014. Complete Genome Sequence of Foot-and-Mouth Disease Virus Serotype O Isolated from Bangladesh. Genome Announc 2 (1), e01253-13.
FMDV-O	EGY 10/2011 (Egypt/2011)	7280 nt	KC440883	Xu et al. 2013, unpublished.
FMDV-O	O/S16KOR/2002 (pig/South Korea/2002)	8214 nt	KF694746	Lee et al. 2013, unpublished.
FMDV-O	O/S15KOR/2002 (pig/South Korea/2002)	8214 nt	KF694745	Lee et al. 2013, unpublished.
FMDV-O	O/S14KOR/2002 (cattle/South Korea/2002)	8212 nt	KF694744	Lee et al. 2013, unpublished.
FMDV-O	O/S13KOR/2002 (pig/South Korea/2002)	8213 nt	KF694743	Lee et al. 2013, unpublished.
FMDV-O	O/S12KOR/2002 (pig/South Korea/2002)	8211 nt	KF694742	Lee et al. 2013, unpublished.
FMDV-O	O/S11KOR/2002 (pig/South Korea/2002)	8211 nt	KF694741	Lee et al. 2013, unpublished.
FMDV-O	O/S10KOR/2002 (pig/South Korea/2002)	8213 nt	KF694740	Lee et al. 2013, unpublished.
FMDV-O	O/S09KOR/2002 (pig/South Korea/2002)	8212 nt	KF694739	Lee et al. 2013, unpublished.
FMDV-O	O/S08KOR/2002 (pig/South Korea/2002)	8212 nt	KF694738	Lee et al. 2013, unpublished.
FMDV-O	O/S07KOR/2002 (pig/South Korea/2002)	8212 nt	KF694737	Lee et al. 2013, unpublished.
FMDV-O	O/S06KOR/2002 (pig/South Korea/2002)	8212 nt	KF694736	Lee et al. 2013, unpublished.
FMDV-O	O/S05KOR/2002 (pig/South Korea/2002)	8212 nt	KF694735	Lee et al. 2013, unpublished.
FMDV-O	O/S04KOR/2002 (pig/South Korea/2002)	8213 nt	KF694734	Lee et al. 2013, unpublished.
FMDV-O	O/S03KOR/2002 (pig/South Korea/2002)	8213 nt	KF694733	Lee et al. 2013, unpublished.
FMDV-O	O/S02KOR/2002 (pig/South Korea/2002)	8212 nt	KF694732	Lee et al. 2013, unpublished.
FMDV-O	O/S01KOR/2002 (pig/South Korea/2002)	8212 nt	KF694731	Lee et al. 2013, unpublished.
FMDV-O	persistent/OUKG/49dpc (cattle/United Kingdom)	6999 nt	JX947860	Ramasamy Parthiban et al. 2012, unpublished.
FMDV-O	--- (swine/Taiwan/1997)	8134 nt	NC_004004	Beard & Mason. 2000. Genetic determinants of altered virulence of Taiwanese foot-and-mouth disease virus. J. Virol. 74 (2), 987-991.
FMDV-O	ISR/2/2011 (cattle/Israel/2011)	8194 nt	JX040501	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/27/2011 (cattle/Turkey/2011)	8194 nt	JX040500	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/8/2011 (cattle/Turkey/2011)	8194 nt	JX040499	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/1086/2010 (cattle/Turkey/2010)	8194 nt	JX040498	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/1003/2010 (cattle/Turkey/2010)	8194 nt	JX040497	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/926/2010 (cattle/Turkey/2010)	8194 nt	JX040496	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/883/2010 (cattle/Turkey/2010)	8194 nt	JX040495	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/868/2010 (cattle/Turkey/2010)	8194 nt	JX040494	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/840/2010 (cattle/Turkey/2010)	8194 nt	JX040493	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/36/2010 (cattle/Turkey/2010)	8194 nt	JX040492	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	TUR/18/2010 (cattle/Turkey/2010)	8194 nt	JX040491	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	BUL/32/2011 (cattle/Bulgaria/2011)	8194 nt	JX040490	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	BUL/30/2011 (cattle/Bulgaria/2011)	8194 nt	JX040489	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	BUL/26/2011 (cattle/Bulgaria/2011)	8194 nt	JX040488	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	BUL/20/2011 (cattle/Bulgaria/2011)	8194 nt	JX040487	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	BUL/11/2011 (cattle/Bulgaria/2011)	8194 nt	JX040486	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	BUL/1/2010 (cattle/Bulgaria/2010)	8194 nt	JX040485	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	12LPN3 (cattle/Bulgaria/2011)	8194 nt	JX066665	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	12LPN1 (cattle/Bulgaria/2011)	8194 nt	JX066664	Valdazo-Gonzalez et al. 2012. Reconstruction of the Transmission History of RNA Virus Outbreaks Using Full Genome Sequences: Foot-and-Mouth Disease Virus in Bulgaria in 2011. PLoS ONE 7 (11), E49650.
FMDV-O	BFS 1860 B5.9D.V (cattle/United Kingdom/2007)	8193 nt	JX570655	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 B4.9D.V (cattle/United Kingdom/2007)	8193 nt	JX570654	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 B3.3D.V (cattle/United Kingdom/2007)	8193 nt	JX570653	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 B2.32D.P (cattle/United Kingdom/2007)	8193 nt	JX570652	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 B2.6D.P (cattle/United Kingdom/2007)	8193 nt	JX570651	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 B2.6D.V(cattle/United Kingdom/2007)	8193 nt	JX570650	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 B2.4D.P (cattle/United Kingdom/2007)	8193 nt	JX570649	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 B2.2D.P (cattle/United Kingdom/2007)	8193 nt	JX570648	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 B1.2D.V (cattle/United Kingdom/2007)	8193 nt	JX570647	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A5.9D.V (cattle/United Kingdom/2007)	8193 nt	JX570646	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A4.12D.V (cattle/United Kingdom/2007)	8193 nt	JX570645	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A3.5D.V (cattle/United Kingdom/2007)	8193 nt	JX570644	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A2.32D.P (cattle/United Kingdom/2007)	8193 nt	JX570643	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A2.6D.P (cattle/United Kingdom/2007)	8193 nt	JX570642	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A2.6D.V (cattle/United Kingdom/2007)	8193 nt	JX570641	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A2.4D.P (cattle/United Kingdom/2007)	8193 nt	JX570640	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A2.2D.P (cattle/United Kingdom/2007)	8193 nt	JX570639	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	BFS 1860 A1.2D.V (cattle/United Kingdom/2007)	8193 nt	JX570638	Juleff et al. 2013. Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus. J. Gen. Virol. 94 (1), 108-119.
FMDV-O	O/CHN/Mya98/33-P (cattle/China/2010)	8221 nt	JQ973889	Zhou et al. 2012, unpublished.
FMDV-O	O/GSLX/2010 (pig/China/2010)	8114 nt	JQ900581	Bao et al. 2012, unpublished.
FMDV-O	O/HK/2001 (China/2001)	6966 nt	EU400597	Zhao et al. 2008. Sequence analysis of the protein-coding regions of foot-and-mouth disease virus O/HK/2001. Vet. Microbiol. 130 (3-4), 238-246.
FMDV-O	O/GZ/CHA/2010 (cattle/China/2010)	8241 nt	JN998086	Zheng et al. 2012. Genetic characterization of a new pandemic Southeast Asia topotype strain of serotype O foot-and-mouth disease virus isolated in China during 2010. Virus Genes 44 (1), 80-88.
FMDV-O	O/BY/CHA/2010 (pig/China/2010)	8237 nt	JN998085	Zheng et al. 2012. Genetic characterization of a new pandemic Southeast Asia topotype strain of serotype O foot-and-mouth disease virus isolated in China during 2010. Virus Genes 44 (1), 80-88.
FMDV-O	MAY/7/2007 (cattle/Malaysia/2007)	8186 nt	HQ632772	Abdul-Hamid et al. 2011. Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia. Virus Genes 43 (1), 41-45.
FMDV-O	MAY/8/2005 (pig/Malaysia/2005)	8130 nt	HQ632771	Abdul-Hamid et al. 2011. Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia. Virus Genes 43 (1), 41-45.
FMDV-O	MAY/1/2004 (cattle/Malaysia/2007)	8190 nt	HQ632770	Abdul-Hamid et al. 2011. Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia. Virus Genes 43 (1), 41-45.
FMDV-O	MAY/7/2001 (cattle/Malaysia/2001)	8159 nt	HQ632769	Abdul-Hamid et al. 2011. Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia. Virus Genes 43 (1), 41-45.
FMDV-O	MAY/3/2000 (pig/Malaysia/2000)	8190 nt	HQ632768	Abdul-Hamid et al. 2011. Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia. Virus Genes 43 (1), 41-45.
FMDV-O	O/VN/YB105/2009 (Viet Nam/2009)	6999 nt	GU582116	Le et al. 2011. Development of one-step multiplex RT-PCR method for simultaneous detection and differentiation of foot-and-mouth disease virus serotypes O, A, and Asia 1 circulating in Vietnam. J. Virol. Methods 175 (1), 101-108.
FMDV-O	O/VN/QB88/2009 (Viet Nam/2009)	6999 nt	GU582115	Le et al. 2011. Development of one-step multiplex RT-PCR method for simultaneous detection and differentiation of foot-and-mouth disease virus serotypes O, A, and Asia 1 circulating in Vietnam. J. Virol. Methods 175 (1), 101-108.
FMDV-O	O/YS/CHA/05 (pig/China/2005)	8262 nt	GQ452295	Yang et al. 2011. Identification of a conserved linear epitope on the VP1 protein of serotype O foot-and-mouth disease virus by neutralising monoclonal antibody 8E8. Virus Res. 155 (1), 291-299.
FMDV-O	O/YM/YN/2000 (pig/China/2000)	8133 nt	HQ412603	Xin et al. 2010, unpublished.
FMDV-O	China/5/99(Fujian) (pig/China/1999)	8231 nt	HQ412603	Bai et al. 2010. Genetic characterization of the cell-adapted PanAsia strain of foot-and-mouth disease virus O/Fujian/CHA/5/99 isolated from swine. Virol. J. 7, 208.
FMDV-O	Israel 07-6387 (cattle/Israel/2007)	8283 nt	FJ175666	Xu et al. 2008, unpublished.
FMDV-O	Israel 07-6391 (cattle/Israel/2007)	8270 nt	FJ175665	Xu et al. 2008, unpublished.
FMDV-O	Israel 07-6389 (cattle/Israel/2007)	8269 nt	FJ175664	Xu et al. 2008, unpublished.
FMDV-O	Israel 07-6382 (cattle/Israel/2007)	8286 nt	FJ175663	Xu et al. 2008, unpublished.
FMDV-O	Israel 07-6380 (cattle/Israel/2007)	8275 nt	FJ175662	Xu et al. 2008, unpublished.
FMDV-O	Israel 07-6378 (cattle/Israel/2007)	8287 nt	FJ175661	Xu et al. 2008, unpublished.
FMDV-O	O/ES/2001	8163 nt	AY686687	Wang et al. 2010. Foot-and-mouth disease virus leader proteinase inhibits dsRNA-induced type I interferon transcription by decreasing interferon regulatory factor 3/7 in protein levels. Biochem. Biophys. Res. Commun. 399 (1), 72-78.
FMDV-O	O/VN/LC169/2009 (Vietnam/2009)	7839 nt	HM055510	Le et al. 2010, unpublished.
FMDV-O	UKG/2640/2001 (cattle/United Kingdom/2001)	8193 nt	FJ542372	Konig et al. 2001, unpublished.
FMDV-O	UKG/2526/2001 (cattle/United Kingdom/2001)	8193 nt	FJ542371	Konig et al. 2001, unpublished.
FMDV-O	UKG/2085/2001 (cattle/United Kingdom/2001)	8193 nt	FJ542370	Konig et al. 2001, unpublished.
FMDV-O	UKG/2000/2001 (sheep/United Kingdom/2001)	8193 nt	FJ542369	Konig et al. 2001, unpublished.
FMDV-O	UKG/1734/2001 (cattle/United Kingdom/2001)	8193 nt	FJ542368	Konig et al. 2001, unpublished.
FMDV-O	UKG/1558/2001 (cattle/United Kingdom/2001)	8193 nt	FJ542367	Konig et al. 2001, unpublished.
FMDV-O	UKG/1450/2001 (sheep/United Kingdom/2001)	8193 nt	FJ542366	Konig et al. 2001, unpublished.
FMDV-O	UKG/417/2001 (cattle/United Kingdom/2001)	8193 nt	FJ542365	Konig et al. 2001, unpublished.
FMDV-O	UKG/8098/2001 (sheep/United Kingdom/2001)	8193 nt	EU214601	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	UAE 7/99 (United Arab Emirates/1999)	7617 nt	EU140964	Alexandersen et al. 2007, unpublished.
FMDV-O	O/SKR/02 (cattle/South Korea/2002)	8213 nt	EU140964	Lee et al. 2007, unpublished.
FMDV-O	O/UKG/5681/2001 (sheep/United Kingdom/2001)	8193 nt	EF552697	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/5470/2001 (cattle/United Kingdom/2001)	8193 nt	EF552696	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/9443/2001 (sheep/United Kingdom/2001)	8193 nt	EF552695	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/4998/2001 (cattle/United Kingdom/2001)	8194 nt	EF552694	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/4014/2001 (cattle/United Kingdom/2001)	8193 nt	EF552693	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/7299/2001 (sheep/United Kingdom/2001)	8195 nt	EF552692	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/9161/2001 (cattle/United Kingdom/2001)	8193 nt	EF552691	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/7039/2001 (cattle/United Kingdom/2001)	8193 nt	EF552690	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/4141/2001 (sheep/United Kingdom/2001)	8193 nt	EF552689	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	O/UKG/3952/2001 (sheep/United Kingdom/2001)	8193 nt	EF552688	Cottam et al. 2008. Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc. Biol. Sci. 275 (1637), 887-895.
FMDV-O	ouruguay-51 iso51 (Uruguay/1963)	8199 nt	AY593837	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O	ouk2001x iso84 (United Kingdom/2001)	8199 nt	AY593836	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O	otaiwan97 iso106/112 (Taiwan/1997)	8178 nt	AY593835	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O	orei-iran iso53 (Iran/1966)	8198 nt	AY593834	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O	openghu iso108 (Taiwan/1999)	8130 nt	AY593833	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O	O UK2001-FB (United Kingdom/2002)	8200 nt	AY593832	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O	O UK2001-ED (United Kingdom/2002)	8200 nt	AY593831	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-O	O/ZAM14/2010	8152 nt	KU821591	Van Borm et al. 2016. Complete Genome Sequences of Three African Foot-and-Mouth Disease Viruses from Clinical Samples Isolated in 2009 and 2010. Genome Announc 4 (3).
FMDV-O	Tau-YuanTW97 (Taiwan/1997)	8204 nt	AF154271	Kuo et al. 1999, unpublished.
FMDV-O	HKN/2002 (China)	7712 nt	AY317098	Feng et al. 2004. Genome comparison of a novel foot-and-mouth disease virus with other FMDV strains. Biochem. Biophys. Res. Commun. 323 (1), 254-263.
FMDV-C₁	c1ober iso88 (Germany: Oberbayern/1960)	8142 nt	AY593805	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-C₁	c1noville iso56 (Switzerland/1965)	8150 nt	AY593804	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-C₃	c3resende iso1 (Brazil/1955)	8192 nt	AY593807	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-C₃	c3ind iso19 (Brazil/1971)	8183 nt	AY593806	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-C₄	c4 Tierra del Fuego iso2 (Argentina/1966)	8188 nt	AY593808	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-C₅	c5arg iso60 (Argentina/1969)	8191 nt	AY593809	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-C	KEN/1/2004 (cattle/Kenya/2004)	8199 nt	KM268897	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV-C	cwald iso32 (United Kingdom/1970)	8110 nt	AY593810	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV-C	C-S8p460p5d (Spain)	8115 nt	DQ409191	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	C-S8p460d417 (Spain)	8115 nt	DQ409189	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	C-S8p360p5d (Spain)	8115 nt	DQ409188	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	C-S8p360d417 (Spain)	7698 nt	DQ409186	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	C-S8p260p3d (Spain)	8115 nt	DQ409185	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	C-S8p260d417 (Spain)	7698 nt	DQ409183	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	H595	8115 nt	AM409325	Herrera et al. 2007. Molecular basis for a lack of correlation between viral fitness and cell killing capacity. PLoS Pathog. 3 (4), E53.
FMDV-C	H51	8115 nt	AM409190	Escarmis et al. 1996. Genetic lesions associated with Muller's ratchet in an RNA virus. J. Mol. Biol. 264 (2), 255-267.
FMDV-C	rp146 (Spain)	8115 nt	AJ133359	Toja et al. 1999. Genomic nucleotide sequence of a foot-and-mouth disease virus clone and its persistent derivatives. Implications for the evolution of viral quasispecies during a persistent infection. Virus Res. 64 (2), 161-171.
FMDV-C	c-s8c1 (Spain: Olot)	8115 nt	AJ133357	Toja et al. 1999. Genomic nucleotide sequence of a foot-and-mouth disease virus clone and its persistent derivatives. Implications for the evolution of viral quasispecies during a persistent infection. Virus Res. 64 (2), 161-171.
FMDV-C	C-S8p460d951 (Spain)	7164 nt	DQ409190	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	C-S8p360d951 (Spain)	7164 nt	DQ409187	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	C-S8p260d999 (Spain)	7116 nt	DQ409184	Garcia-Arriaza et al. 2006. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. J. Mol. Biol. 360 (3), 558-572.
FMDV-C	C-S8p200 (Spain)	8115 nt	FJ824812	Ojosnegros et al. 2010. Competition-colonization dynamics in an RNA virus. Proc. Natl. Acad. Sci. U.S.A. 107 (5), 2108-2112.
FMDV-C	C-S8 (Spain)	8115 nt	AF274010	Baranowski et al. 1998. Multiple virulence determinants of foot-and-mouth disease virus in cell culture. J. Virol. 72 (8), 6362-6372.
FMDV-C	rp99 (cattle/United Kingdom/1967)	8115 nt	AJ133358	Toja et al. 1999. Genomic nucleotide sequence of a foot-and-mouth disease virus clone and its persistent derivatives. Implications for the evolution of viral quasispecies during a persistent infection. Virus Res. 64 (2), 161-171.
FMDV-C	C3Arg85	8161 nt	AJ007572	Escarmis et al. 1998. Rapid selection in modified BHK-21 cells of a foot-and-mouth disease virus variant showing alterations in cell tropism. J. Virol. 72 (12), 10171-10179.
FMDV-C	C3Arg85	8161 nt	AJ007347	Escarmis et al. 1998. Rapid selection in modified BHK-21 cells of a foot-and-mouth disease virus variant showing alterations in cell tropism. J. Virol. 72 (12), 10171-10179.
FMDV-C	R-B 45	8115 nt	AM503966	Herrera et al. 2008. Persistence of foot-and-mouth disease virus in cell culture revisited: implications for contingency in evolution. J. Gen. Virol. 89 (PT 1), 232-244.
FMDV-C	R-D 45	8115 nt	AM503965	Herrera et al. 2008. Persistence of foot-and-mouth disease virus in cell culture revisited: implications for contingency in evolution. J. Gen. Virol. 89 (PT 1), 232-244.
FMDV- Asia 1	Asia1/HN/2006	8236 nt	KC412634	Lian et al. 2015. Recovery of infectious type Asia1 foot-and-mouth disease virus from suckling mice directly inoculated with an RNA polymerase I/II-driven unidirectional transcription plasmid. Virus Res. 208, 73-81.
FMDV- Asia 1	TUR/13/2013 (cattle/Turkey/2013)	8201 nt	KM268898	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV- Asia 1	As/SIN/PAK/L810/2009 (cattle/Pakistan/2009)	7623 nt	JN006720	Jamal et al. 2011. Molecular characterization of serotype Asia-1 foot-and-mouth disease viruses in Pakistan and Afghanistan; emergence of a new genetic Group and evidence for a novel recombinant virus. Infect. Genet. Evol. 11 (8), 2049-2062.
FMDV- Asia 1	As/SIN/PAK/L5/2008 (cattle/Pakistan/2008)	7610 nt	JN006719	Jamal et al. 2011. Molecular characterization of serotype Asia-1 foot-and-mouth disease viruses in Pakistan and Afghanistan; emergence of a new genetic Group and evidence for a novel recombinant virus. Infect. Genet. Evol. 11 (8), 2049-2062.
FMDV- Asia 1	Asia1/BAM/AFG/L-590/2009 (cattle/Afghanistan/2009)	7622 nt	HQ113233	Belsham et al. 2011. Rescue of Foot-and-Mouth Disease Viruses That Are Pathogenic for Cattle from Preserved Viral RNA Samples. PLoS ONE 6 (1), e14621.
FMDV- Asia 1	Asia1/VN/LC04/2005 (buffalo/Viet Nam/2005)	7803 nt	GU125646	Le et al. 2010. Heterogeneity and genetic variations of serotypes O and Asia 1 foot-and-mouth disease viruses isolated in Vietnam. Vet. Microbiol. 145 (3-4), 220-229.
FMDV- Asia 1	Asia1/VN/QT03/2007 (cattle/Viet Nam/2005)	7827 nt	GU125645	Le et al. 2010. Heterogeneity and genetic variations of serotypes O and Asia 1 foot-and-mouth disease viruses isolated in Vietnam. Vet. Microbiol. 145 (3-4), 220-229.
FMDV- Asia 1	MDV HN/CHA/06 (pig/China/2015)	8103 nt	KU360085	Lian et al. 2016, The VP1 S154D mutation of type Asia1 foot-and-mouth disease virus enhances viral replication and pathogenicity. Infect. Genet. Evol. in press.
FMDV- Asia 1	PAK_030/2002	7249 nt	JF749849	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV- Asia 1	ZB/CHA/58(att) (China/1958)	8193 nt	DQ533483	Xin et al. 2009. Genome analysis and development of infectious cDNA clone of a virulence-attenuated strain of foot-and-mouth disease virus type Asia 1 from China. Vet. Microbiol. 138 (3-4), 273-280.
FMDV- Asia 1	Asial/HN/2006 (pig/China/2006)	8236 nt	KC462884	Ma et al. 2013, unpublished.
FMDV- Asia 1	Asia1/1/YZ/CHA/06 (pig/China/2006)	8237 nt	HQ631363	Xue et al. 2010, unpublished.
FMDV- Asia 1	As1/1/Shamir/89, vaccine strain (Israel/1989)	8196 nt	JF739177	Lee et al. 2011, unpublished.
FMDV- Asia 1	MAY/9/99 (cattle/Malaysia/1999)	8177 nt	HQ632774	Abdul-Hamid et al. 2011. Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia. Virus Genes 43 (1), 41-45.
FMDV- Asia 1	Asia1/WHN/CHA/06 (pig/China/2006)	8239 nt	FJ906802	Yang et al. 2011. Isolation, identification and complete genome sequence analysis of a strain of foot-and-mouth disease virus serotype Asia1 from pigs in southwest of China. Virol. J. 8, 175.
FMDV- Asia 1	Asia1/YS/CHA/05 (cattle/China/2005)	8194 nt	GU931682	Wang et al. 2011. Identification of a conformational epitope on the VP1 G-H Loop of type Asia1 foot-and-mouth disease virus defined by a protective monoclonal antibody. Vet. Microbiol. 148 (2-4), 189-199.
FMDV- Asia 1	IND 63/72 (India/1972)	8167 nt	AF540910	Saravanan et al. 2003, unpublished.
FMDV- Asia 1	IND 97-03 (cattle/India/2002)	8279 nt	DQ989323	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 139-02 (cattle/India/2002)	8251 nt	DQ989322	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 438-01 (cattle/India/2001)	8273 nt	DQ989321	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 182-02 (cattle/India/2002)	8273 nt	DQ989320	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 423-01 (cattle/India/2001)	8274 nt	DQ989319	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 61-02 (cattle/India/2002)	8274 nt	DQ989318	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 148-01 (cattle/India/2001)	8274 nt	DQ989317	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 47-93 (cattle/India/1993)	8272 nt	DQ989315	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 354-01 (cattle/India/2001)	8273 nt	DQ989314	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 52-87 (cattle/India/1987)	8270 nt	DQ989313	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 13-91 (cattle/India/1991)	8270 nt	DQ989312	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 37-02 (cattle/India/2002)	8188 nt	DQ989311	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 13-91 (cattle/India/1991)	8270 nt	DQ989312	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 101-99 (cattle/India/1999)	8204 nt	DQ989310	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 82-96 (cattle/India/1996)	8275 nt	DQ989309	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 397-97 (cattle/India/1997)	8275 nt	DQ989308	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 247-92 (cattle/India/1992)	8272 nt	DQ989307	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 81-86 (cattle/India/1986)	8227 nt	DQ989306	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 116-90 (cattle/India/1990)	8273 nt	DQ989305	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 334-00 (cattle/India/1986)	8227 nt	DQ989304	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	IND 151-94 (cattle/India/1994)	8227 nt	DQ989303	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	asia1leb83 iso28 (Lebanon/1983)	8196 nt	AY593800	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- Asia 1	asia1leb4 iso4 (Lebanon/1983)	8196 nt	AY593799	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- Asia 1	asia1leb-89 iso89 (Lebanon/1983)	8196 nt	AY593798	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- Asia 1	asia1-3kimron iso61 (Israel/1963)	8141 nt	AY593797	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- Asia 1	asia1-2isr13-63 iso6 (Israel/1963)	8192 nt	AY593796	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- Asia 1	asia1-1pak iso3 (Pakistan/1954)	8186 nt	AY593795	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- Asia 1	Ind 491/97; WBN 117/85, vaccine strain (India: West Bengal/1985)	8178 nt	AY687334	Sanyal et al. 2004. Complete nucleotide sequence analysis of a vaccine strain and a field isolate of foot-and-mouth disease virus serotype Asia1 with an insertion in VP1 genomic region. Acta Virol. 48 (3), 159-166.
FMDV- Asia 1	Ind 321/01 (India: Madhya Pradesh/2001)	8178 nt	AY687333	Sanyal et al. 2004. Complete nucleotide sequence analysis of a vaccine strain and a field isolate of foot-and-mouth disease virus serotype Asia1 with an insertion in VP1 genomic region. Acta Virol. 48 (3), 159-166.
FMDV- Asia 1	YNBS/58 (cattle/China)	7731 nt	AY390432	Chang et al. 2003, unpublished.
FMDV- Asia 1	Asia1/MOG/05 (cattle/Mongolia)	8193 nt	EF614458	Lee et al. 2009. Evidence of recombination in a new isolate of foot-and-mouth disease virus serotype Asia 1. Virus Res. 139 (1), 117-121.
FMDV- Asia 1	Asia1/HNK/CHA/05 (cattle/Hong Kong)	8187 nt	EF149010	Li et al. 2007. Comparisons of the complete genomes of two Chinese isolates of a recent foot-and-mouth disease type Asia 1 virus. Arch. Virol. 152 (9), 1699-1708.
FMDV- Asia 1	Asia1/Jiangsu/China/2005 (cattle/China: Jiangsu, Wuxi)	8189 nt	EF149009	Li et al. 2007. Comparisons of the complete genomes of two Chinese isolates of a recent foot-and-mouth disease type Asia 1 virus. Arch. Virol. 152 (9), 1699-1708.
FMDV- Asia 1	IND 21-89 (buffalo/India/1989)	8234 nt	AJ633821	Mohapatra et al. 2008. Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades. Virus Res. 136 (1-2), 16-29.
FMDV- Asia 1	HN/CHA/06 (pig)	8236 nt	KR073010	Yang et al. 2015, unpublished.
FMDV- SAT 1	sat1rhod iso33 (Zimbabwe: Rhodesia/1966)	8133 nt	AY593846	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	sat1bot iso47 (Botswana/1968)	8175 nt	AY593845	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	sat1-7isrl iso12 (Israel/1962)	8190 nt	AY593844	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	sat1-6swa iso16 (Namibia: South West Africa/1940)	8180 nt	AY593843	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	sat1-5sa iso13 (South Africa/1961)	8176 nt	AY593842	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	sat1-4srhod iso24 (Zimbabwe: Rhodesia/1958)	8177 nt	AY593841	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	sat1-3swa iso14 (Namibia: South West Africa/1949)	8179 nt	AY593840	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	sat1-20 iso11 (1937)	8141 nt	AY593839	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	sat1-1bech iso30 (Botswana/1970)	8173 nt	AY593838	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 1	TAN/22/2012 (cattle/Tanzania/2012)	8156 nt	KM268899	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV- SAT 1	KNP/196/91/1 (Syncerus caffer/South Africa/2009)	8008 nt	KR108948	Maree et al. 2015, unpublished.
FMDV- SAT 1	KEN_004/2002	8144 nt	JF749860	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV- SAT 1	Buffalo 17 QE (Syncerus caffer/Uganda/2007)	7651 nt	HM067706	Ayebazibwe et al. 2011. The role of African buffalos (Syncerus caffer) in the maintenance of foot-and-mouth disease in Uganda. BMC Vet. Res. 6, 54.
FMDV- SAT 1	SAT1/NAM01/2010	8075 nt	KU821590	Van Borm et al. 2016. Complete Genome Sequences of Three African Foot-and-Mouth Disease Viruses from Clinical Samples Isolated in 2009 and 2010. Genome Announc 4 (3).
FMDV- SAT 2	KEN/3/57 (Kenya)	7637 nt	FJ461346	Knowles et al. 1999, unpublished.
FMDV- SAT 2	SAT2/ZAM18/2009	8171 nt	KU821592	Van Borm et al. 2016. Complete Genome Sequences of Three African Foot-and-Mouth Disease Viruses from Clinical Samples Isolated in 2009 and 2010. Genome Announc 4 (3).
FMDV- SAT 2	TAN/5/2012 (cattle/Tanzania/2012)	8153 nt	KM268900	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV- SAT 2	PAT/1/2012 (cattle/Palestinian Autonomous Territories/2012)	8133 nt	JX014256	Valdao-Gonzales et al. 2012. Genome Sequences of SAT 2 Foot-and-Mouth Disease Viruses from Egypt and Palestinian Autonomous Territories (Gaza Strip). J. Virol. 86 (16), 8901-8902.
FMDV- SAT 2	EGY/9/2012 (cattle/Egypt/2012)	8134 nt	JX014255	Valdao-Gonzales et al. 2012. Genome Sequences of SAT 2 Foot-and-Mouth Disease Viruses from Egypt and Palestinian Autonomous Territories (Gaza Strip). J. Virol. 86 (16), 8901-8902.
FMDV- SAT 2	ZIM_22/2003	7797 nt	JF749864	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV- SAT 2	UGA_002/2002	8168 nt	JF749862	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV- SAT 2	KEN_002/2002	7797 nt	JF749861	Xu et al. 2013. Development of a universal RT-PCR for amplifying and sequencing the leader and capsid-coding region of foot-and-mouth disease virus. J. Virol. Methods 189 (1), 70-76.
FMDV- SAT 2	EGY 3/2012 (Egypt/2012)	7288 nt	KC440884	Xu et al. 2013, unpublished.
FMDV- SAT 2	Buffalo 10 QE (Syncerus caffer/Uganda/2007)	7633 nt	HM067705	Ayebazibwe et al. 2011. The role of African buffalos (Syncerus caffer) in the maintenance of foot-and-mouth disease in Uganda. BMC Vet. Res. 6, 54.
FMDV- SAT 2	Buffalo 6 QE (Syncerus caffer/Uganda/2007)	7642 nt	HM067704	Ayebazibwe et al. 2011. The role of African buffalos (Syncerus caffer) in the maintenance of foot-and-mouth disease in Uganda. BMC Vet. Res. 6, 54.
FMDV- SAT 2	ZIM/7/83 (Zimbabwe/1983)	8173 nt	AF540910	van Rensburg & Nel. 1999. Characterization of the structural-protein-coding region of SAT 2 type foot-and-mouth disease virus. Virus Genes 19 (3), 229-233.
FMDV- SAT 2	sat2-3kenya-21 (Kenya/1960)	8203 nt	AY593849	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 2	sat2-2 iso25 (1967)	8135 nt	AY593848	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 2	sat2-2-1rhod iso26 (Zimbabwe: Rhodesia/1948)	8119 nt	AY593847	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 2	KNP-19-89 (Syncerus caffer/South Africa/2009)	8008 nt	KR108949	Maree et al. 2015, unpublished.
FMDV- SAT 2	Murchison Falls National Park (buffalo/Uganda/2002)	7637 nt	FJ461346	Christensen et al. 2004. Characterisation of a new type O lineage of FMDV from Uganda with atypical clinical manifestations in domestic cattle. (in) PROCEEDINGS OF THE OPEN SESSION OF THE EUFMD RESEARCH GROUP APPENDIX 23: 159-161; Chania, Crete, Greece.
FMDV- SAT 3	KNP-10-90 (Syncerus caffer/South Africa/2009)	8165 nt	KR108950	Maree et al. 2015, unpublished.
FMDV- SAT 3	SAT3/ZIM/4/19810 (Zimbabwe/1981)	8124 nt	KX375417	Duque et al. 2016. Protection induced by a commercial bivalent vaccine against Foot-and-Mouth Disease 2010 field virus from Ecuador. Vaccine, in press.
FMDV- SAT 3	ZIM/6/91 (cattle/Zimbabwe/1991)	8178 nt	KM268901	Logan et al. 2014. A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15 (1), 828.
FMDV- SAT 3	UGA/1/13 (cattle/Uganda/2013)	8203 nt	KJ820999	Dhikusooka et al. 2015. Foot-and-Mouth Disease Virus Serotype SAT 3 in Long-Horned Ankole Calf, Uganda. Emerging Infect. Dis. 21 (1), 111-114.
FMDV- SAT 3	sat3-3kenya iso22 (Kenya/1960)	8164 nt	AY593852	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 3	sat3-3bech iso29 (Botswana/1961)	8164 nt	AY593851	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 3	sat3-2sa iso27 (South Africa/1959)	8170 nt	AY593850	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.
FMDV- SAT 3	sat3-4bech iso23 (Botswana/1965)	8131 nt	AY593853	Carillo et al. 2005. Comparative genomics of foot-and-mouth disease virus. J. Virol. 79 (10), 6487-6504.

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