|
Species
Type
Strain |
Length |
Acc. No. |
Reference |
| |
|
Parechovirus A |
HPeV-1 |
human parechovirus 1 strain Harris |
7339 nt |
S45208 |
Hyypiä et al. 1992. A distinct picornavirus group identified by
sequence analysis. PNAS 89 (18):8847-8851. |
|
NC_038319 |
Hyypiä et al. 1992. A distinct picornavirus group identified by
sequence analysis. PNAS 89 (18):8847-8851. |
|
L02971 |
Hyypiä et al. 1992. A distinct picornavirus group identified by
sequence analysis. PNAS 89 (18):8847-8851. |
|
human parechovirus 1 strain BNI-788St |
7355 nt |
HM996978 |
de Souza Luna et al. 2008. Identification of a contemporary human parechovirus type 1 by
VIDISCA and characterisation of its full genome.
Virol. J. 5:26. |
|
human parechovirus 1 strain 7555312 |
7380 nt |
FM178558 |
Zoll et al. 2009. Identification of potential recombination breakpoints in human
parechoviruses.
J. Virol. 83 (7):3379-3383. |
|
human parechovirus 1 strain PicoBank/HPeV1/a virus p123 |
7296 nt |
FM242866 |
Williams et al. 2009. Evolution and conservation in human parechovirus genomes.
J. Gen. Virol. 90 (PT 7):1702-1712. |
|
human parechovirus 1 strain SH1 |
7314 nt |
FJ840477 |
Shan et al. 2009. The first detection of human parechovirus infections in China.
J. Clin. Virol. 45 (4):371-372. |
|
human parechovirus 1 strain BR/21/2006 |
6928 nt |
HQ696570 |
Drexler et al. 2011. Full genome sequence analysis of parechoviruses from Brazil reveals
geographical patterns in the evolution of non-structural genes and
intratypic recombination in the capsid region.
J. Gen. Virol. 92 (PT 3):564-571. |
|
human parechovirus 1 strain BR/27/2006 |
6924 nt |
HQ696571 |
Drexler et al. 2011. Full genome sequence analysis of parechoviruses from Brazil reveals
geographical patterns in the evolution of non-structural genes and
intratypic recombination in the capsid region.
J. Gen. Virol. 92 (PT 3):564-571. |
|
human parechovirus 1 strain BR/30/2006 |
6920 nt |
HQ696572 |
Drexler et al. 2011. Full genome sequence analysis of parechoviruses from Brazil reveals
geographical patterns in the evolution of non-structural genes and
intratypic recombination in the capsid region.
J. Gen. Virol. 92 (PT 3):564-571. |
|
human parechovirus 1 strain BR/114/2006 |
6917 nt |
HQ696573 |
Drexler et al. 2011. Full genome sequence analysis of parechoviruses from Brazil reveals
geographical patterns in the evolution of non-structural genes and
intratypic recombination in the capsid region.
J. Gen. Virol. 92 (PT 3):564-571. |
|
human parechovirus 1 strain BR/145/2006 |
6921 nt |
HQ696574 |
Drexler et al. 2011. Full genome sequence analysis of parechoviruses from Brazil reveals
geographical patterns in the evolution of non-structural genes and
intratypic recombination in the capsid region.
J. Gen. Virol. 92 (PT 3):564-571. |
|
human parechovirus 1 strain SH401 |
7319 nt |
JX441355 |
Wang et al. 2012. Complete genome sequence of a novel human parechovirus.
J. Virol. 86 (21):11945-11946. |
|
human parechovirus 1 strain CAU10-NN |
7348 nt |
JX575746 |
Kim et al. Unpublished. |
|
human parechovirus 1 strain MX/Cuernavaca |
7217 nt |
KJ152442 |
Wilson et al. 2014. Actionable diagnosis of neuroleptospirosis by next-generation
sequencing.
N. Engl. J. Med. 370 (25):2408-2417. |
|
human parechovirus 1 strain TW-00010-2010 |
6540 nt (polyprotein) |
KY460516 |
Gong et al. 2017 A metagenomics study for the identification of respiratory viruses
in mixed clinical specimens: an application of the iterative
mapping approach.
Arch. Virol. 162 (7):2003-2012. |
|
HPeV-2 |
human parechovirus 2 strain Williamson (Ohio/56) |
7348 nt |
AJ005695 |
Ghazi et al. 1998. Molecular analysis of human parechovirus type 2
(formerly echovirus 23). J. Gen. Virol. 79 (PT 11):2641-2650. |
|
human parechovirus 2 strain LPZ04-2008 |
7249 nt |
HM996978 |
Pietsch et al. Unpublished. |
|
HPeV-3 |
human parechovirus 3 strain A308/99 |
7321 nt |
AB084913 |
Ito et al. 2004. Isolation and identification of a novel human parechovirus.
J. Gen. Virol. 85 (PT 2):391-398. |
|
human parechovirus 3 strain 6516899 |
7294 nt |
GQ183029 |
Benschop et al. 2010. Comprehensive full-length sequence analyses of human
parechoviruses: diversity and recombination.
J. Gen. Virol. 91 (PT 1):145-154. |
|
human parechovirus 3 strain Can82853-01 |
7322 nt |
GQ183029 |
Abed & Boivin. 2006. Molecular characterization of a Canadian human parechovirus
(HPeV)-3 isolate and its relationship to other HPeVs.
J. Med. Virol. 77 (4):566-570. |
|
human parechovirus 3 strain Bonn-1 |
7278 nt |
JX682576 |
Eis-Hübinger et al. 2012. Two Cases of Sepsis-Like Illness in Infants by Human Parechovirus
Traced Back to Elder Siblings with Mild Gastroenteritis and
Respiratory Symptoms.
J. Clin. Microbiol. 51 (2):715-718. |
|
human parechovirus 3 strain Bonn-2 |
7153 nt |
JX826607 |
Eis-Hübinger et al. 2012. Two Cases of Sepsis-Like Illness in Infants by Human Parechovirus
Traced Back to Elder Siblings with Mild Gastroenteritis and
Respiratory Symptoms.
J. Clin. Microbiol. 51 (2):715-718. |
|
human parechovirus 3 strain VGHKS-2007 |
7349 nt |
KM986843 |
Chang et al. Unpublished. |
|
human parechovirus 3 strain GL-Cons-comb-SA1-2015 |
7334 nt |
KY020128 |
Nelson et al. 2017. An outbreak of severe infections among Australian infants caused by
a novel recombinant strain of human parechovirus type 3.
Sci Rep 7:44423. |
|
HPeV-4 |
human parechovirus 4 strain K251176-02 |
7366 nt |
DQ315670 |
Benschop et al. 2006. Fourth human parechovirus serotype.
Emerg. Infect. Dis. 12 (10):1572-1575. |
|
human parechovirus 4 strain T75-4077 |
7350 nt |
AM235750 |
Al-Sunaidi et al. 2007. Analysis of a new human parechovirus allows the definition of
parechovirus types and the identification of RNA structural domains.
J. Virol. 81 (2):1013-1021. |
|
human parechovirus 4 strain Fuk2005-123 |
7349 nt |
AB433629 |
Wakatsuko et al. 2008. Identification and characterization of two strains of human
parechovirus 4 isolated from two clinical cases in fukuoka city,
Japan.
J. Clin. Microbiol. 46 (9):3144-3146. |
|
human parechovirus 4 strain Fuk2001-282 |
2328 nt (P1par) |
AB433630 |
Wakatsuko et al. 2008. Identification and characterization of two strains of human
parechovirus 4 isolated from two clinical cases in fukuoka city,
Japan.
J. Clin. Microbiol. 46 (9):3144-3146. |
|
human parechovirus 4 strain R12644/1999/HUN |
3046 nt (P1) |
GU125397 |
Boros et al. 2010. IDetection and characterization of human parechoviruses in archived
cell cultures, in Hungary.
J. Clin. Microbiol. 47 (4):379-381. |
|
human parechovirus 4 strain R15492/1999/HUN |
3046 nt (P1) |
GU125398 |
Boros et al. 2010. IDetection and characterization of human parechoviruses in archived
cell cultures, in Hungary.
J. Clin. Microbiol. 47 (4):379-381. |
|
HPeV-5 |
human parechovirus 5 strain BR/53/2006 |
7348 nt |
HQ696575 |
Drexler et al. 2011. Full genome sequence analysis of parechoviruses from Brazil reveals
geographical patterns in the evolution of non-structural genes and
intratypic recombination in the capsid region. J. Gen. Virol. 92 (PT 3):564-571. |
|
human parechovirus 5 strain BR/77/2006 |
7348 nt |
HQ696576 |
Drexler et al. 2011. Full genome sequence analysis of parechoviruses from Brazil reveals
geographical patterns in the evolution of non-structural genes and
intratypic recombination in the capsid region. J. Gen. Virol. 92 (PT 3):564-571. |
|
human parechovirus 5 strain CT86-6760 (Connecticut/86) |
7366 nt |
AF055846 |
Oberste et al. 1998. Complete sequence of echovirus 23 and its
relationship to echovirus 22 and other human enteroviruses.
Virus Res. 56 (2):217-223. |
|
human parechovirus 5 strain T92-15 |
7320 nt |
AM235749 |
Al-Sunaidi et al. 2007. Analysis of a new human parechovirus allows the definition of
parechovirus types and the identification of RNA structural domains.
J. Virol. 81 (2):1013-1021. |
|
human parechovirus 5 strain CH-ZJ1 |
7298 nt |
AM235749 |
Sun et al. 2012. Complete genome sequence of a novel type of human parechovirus
strain reveals natural recombination events.
J. Virol. 86 (16):8892-8893. |
|
HPeV-6 |
human parechovirus 6 strain NII561-2000 (Japan) |
7347 nt |
AB252582 |
Watanabe et al. 2007. Isolation and characterization of novel
human parechovirus from clinical samples.
Emerg. Inf. Dis. 13 (6):889-895. |
|
human parechovirus 6 strain 2005-823 |
7273 nt |
EU077518 |
de Vries et al. 2008. Human parechovirus type 1, 3, 4, 5, and 6 detection in picornavirus
cultures. J. Clin. Microbiol. 46 (2):759-762. |
|
human parechovirus 6 strain BNI-67 |
7097 nt |
EU022171 |
Baumgarte et al. 2008. Prevalence, types, and RNA concentrations of human parechoviruses,
including a sixth parechovirus type, in stool samples from patients
with acute enteritis. J. Clin. Microbiol. 46 (1):242-248. |
|
human parechovirus 6 strain SH6 |
7311 nt |
FJ888592 |
Shan & Hua. Unpublished. |
|
human parechovirus 6 strain BR/104/2006 |
6928 nt |
EU022171 |
Drexler et al. 2011. Full genome sequence analysis of parechoviruses from Brazil reveals
geographical patterns in the evolution of non-structural genes and
intratypic recombination in the capsid region. J. Gen. Virol. 92 (PT 3):564-571. |
|
human parechovirus 6 strain AFW |
7261 nt |
MG462718 |
Wang et al. Unpublished. |
|
HPeV-7 |
human parechovirus 7 strain PAK5045 |
7146 nt |
EU556224 |
Watanabe et al. 2007. Isolation and characterization of novel
human parechovirus from clinical samples.
Emerg. Inf. Dis. 13 (6):889-895. |
|
HPeV-8 |
human parechovirus 8 strain BR/217/2006 |
7353 nt |
EU716175 |
Drexler et al. 2009. Novel human parechovirus from Brazil.
Emerg. Inf. Dis. 15 (2):310-313. |
|
HPeV-9 |
human parechovirus 9 strain BAN2004-10902 |
681 nt (VP1) |
JX219575 |
Nix et al. 2013. Diversity of picornaviruses in rural Bolivia.
J. Gen. Virol. 94 (PT 9):2017-2028. |
|
HPeV-10 |
human parechovirus 10 strain BAN2004-10903 |
678 nt (VP1) |
JX219568 |
Nix et al. 2013. Diversity of picornaviruses in rural Bolivia.
J. Gen. Virol. 94 (PT 9):2017-2028. |
|
HPeV-11 |
human parechovirus 11 strain BAN2004-10905 |
678 nt (VP1) |
JX219574 |
Nix et al. 2013. Diversity of picornaviruses in rural Bolivia.
J. Gen. Virol. 94 (PT 9):2017-2028. |
|
HPeV-12 |
human parechovirus 12 strain BAN2004-10904 |
678 nt (VP1) |
JX219567 |
Nix et al. 2013. Diversity of picornaviruses in rural Bolivia.
J. Gen. Virol. 94 (PT 9):2017-2028. |
|
HPeV-13 |
human parechovirus 13 strain BAN2004-10901 |
672 nt (VP1) |
JX219579 |
Nix et al. 2013. Diversity of picornaviruses in rural Bolivia.
J. Gen. Virol. 94 (PT 9):2017-2028. |
|
HPeV-14 |
human parechovirus 14 strain 451564/NL/2004 |
624 nt (VP1) |
FJ373179 |
Benschop et al. 2008. High prevalence of human parechovirus (HPeV) genotypes
in the Amsterdam region and identification of specific HPeV variants by direct genotyping of stool samples.
J. Clin. Microbiol. 46 (12):3965-3970. |
|
HPeV-15 |
human parechovirus 15 strain BAN-11614 |
687 nt (VP1) |
JX219573 |
Nix et al. 2013. Diversity of picornaviruses in rural Bolivia.
J. Gen. Virol. 94 (PT 9):2017-2028. |
|
HPeV-16 |
human parechovirus 16 strain BAN-11615 |
669 nt (VP1) |
JX219580 |
Nix et al. 2013. Diversity of picornaviruses in rural Bolivia.
J. Gen. Virol. 94 (PT 9):2017-2028. |
|
HPeV-17 |
human parechovirus 17 strain M36/CI/2014 |
7077 nt |
KT319121 |
Veronica et al. 2015. Detection and characterization of enteroviruses and
parechoviruses in healthy people living in the South of Cote d'Ivoire.
J. Clin. Virol. 71:40-43. |
|
HPeV-18 |
human parechovirus 18 strain GhanaA06 |
789 nt (VP1) |
KY931658 |
Graul et al. 2017. High diversity of human parechovirus including novel types in stool
samples from Ghanaian children.
J. Clin. Virol. 96, 116-119. |
|
human parechovirus 18 strain GhanaA29 |
792 nt (VP1) |
KY931659 |
Graul et al. 2017. High diversity of human parechovirus including novel types in stool
samples from Ghanaian children.
J. Clin. Virol. 96, 116-119. |
|
human parechovirus 18 strain GhanaA36 |
804 nt (VP1) |
KY931660 |
Graul et al. 2017. High diversity of human parechovirus including novel types in stool
samples from Ghanaian children.
J. Clin. Virol. 96, 116-119. |
|
HPeV-19 |
human parechovirus 19 strain 17-827 |
7034 nt |
-- |
Böttcher et al. unpublished. |
|
human parechovirus 19 strain P02-4058 |
693 nt (VP1) |
MH339678 |
Brouwer et al. Unpublished. |
|
Parechovirus B |
LV-1 |
Ljungan virus 1 strain 87-012 |
7590 nt |
AF327920 |
Johansson et al. 2002. Molecular analysis of three Ljungan virus isolates
reveals a new, close-to-root lineage of the Picornaviridae with a cluster of tow unrelated
2A proteins. J. Virol. 76 (17):8920-8930. |
|
NC_003976 |
Johansson et al. 2002. Molecular analysis of three Ljungan virus isolates
reveals a new, close-to-root lineage of the Picornaviridae with a cluster of tow unrelated
2A proteins. J. Virol. 76 (17):8920-8930. |
|
Ljungan virus 1 strain 87-012G |
7635 nt |
EF202833 |
Johansson et al. 2004. Cell culture propagation and biochemical analysis of the Ljungan
virus prototype strain.
Biochem. Biophys. Res. Commun. 317 (4):1023-1029. |
|
Ljungan virus 1 strain 174F |
7591 nt |
AF327921 |
Johansson et al. 2002. Molecular analysis of three Ljungan virus isolates reveals a new,
close-to-root lineage of the Picornaviridae with a cluster of two
unrelated 2A proteins.
J. Virol. 76 (17):8920-8930. |
|
LV-2 |
Ljungan virus 2 (Clethrionomys glareolus picornavirus) strain 145SL |
7592 nt |
AF327922 |
Johansson et al. 2002. Molecular analysis of three Ljungan virus isolates reveals a new,
close-to-root lineage of the Picornaviridae with a cluster of two
unrelated 2A proteins.
J. Virol. 76 (17):8920-8930. |
|
2118 nt |
AF020541 |
Niklasson et al. 1999. A new picornavirus isolated from bank voles
(Clethrionomys glareolus). Virology 255 (1):86-93. |
|
Ljungan virus 2 strain 145SLG |
7637 nt |
AF020541 |
Tolf et al. 2009. Identification of amino acid residues of Ljungan virus VP0 and VP1
associated with cytolytic replication in cultured cells.
Arch. Virol. 154 (8):1271-1284. |
|
Ljungan virus 2 strain 340 |
7591 nt |
KR045607 |
Pounder et al. 2015. Genome characterisation of two Ljungan virus isolates from wild
bank voles (Myodes glareolus) in Sweden.
Infect. Genet. Evol. 36:156-164. |
|
Ljungan virus 2 strain 342 |
7593 nt |
KR045608 |
Pounder et al. 2015. Genome characterisation of two Ljungan virus isolates from wild
bank voles (Myodes glareolus) in Sweden.
Infect. Genet. Evol. 36:156-164. |
|
LV-3 |
Ljungan virus 3 strain M1146 |
7495 nt |
AF538689 |
Johansson et al. 2003. Molecular characterization of M1146, an American
isolate of Ljungan virus (LV) reveals the presence of a new LV genotype.
J. Gen. Virol. 84 (PT 4):837-844. |
|
LV-4 |
Ljungan virus 4 strain 64-7855 |
7436 nt |
EU854568 |
Tolf et al. 2009. Molecular characterization of a novel Ljungan virus
(Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination.
J. Gen. Virol. 90 (PT 4):843-853. |
|
LV-5 |
Ljungan virus 5 strain Fuz1/Japan/2014 |
6603 nt |
LC133331 |
Mitake et al. 2016. Isolation of a sp. nov. Ljungan virus from wild birds in Japan.
J. Gen. Virol. 97 (PT 8):1818-1822. |
|
LV-6 |
Ljungan virus 6 strain RtMrut-PicoV/JL2014-2 |
7631 nt |
KY432929 |
Wu et al. 2018. Comparative analysis of rodent and small mammal viromes to better
understand the wildlife origin of emerging infectious diseases.
Microbiome 6 (1), 178. |
|
Parechovirus C |
SEBV |
Sebokele virus strain An/B/1227/d |
7537 nt |
HF677705 |
Joffret et al. 2013. Genomic characterization of Sebokele virus 1 (SEBV1)
reveals a new candidate species among the genus Parechovirus.
J. Gen. Virol. 94 (PT 7):1547-1553. |
|
NC_021482 |
Joffret et al. 2013. Genomic characterization of Sebokele virus 1 (SEBV1)
reveals a new candidate species among the genus Parechovirus.
J. Gen. Virol. 94 (PT 7):1547-1553. |
|
Parechovirus D |
FePeV |
ferret parechovirus strain ferret/MpPeV1/NL |
7066 nt |
KF006989 |
Smits et al. 2013. Metagenomic analysis of the ferret fecal viral flora.
PLoS ONE 8 (8):E71595. |
|
NC_034453 |
Smits et al. 2013. Metagenomic analysis of the ferret fecal viral flora.
PLoS ONE 8 (8):E71595. |
|
Parechovirus E |
FaPeV |
falcon parechovirus
strain falcon/HA18-080/2014/HUN |
7964 nt |
KF006989 |
Pankovics et al. 2017. Ljungan/Sebokele-like picornavirus in birds of prey, common kestrel
(Falco tinnunculus) and red-footed falcon (F. vespertinus).
Infect. Genet. Evol. 55, 14-19. |
|
NC_035779 |
Pankovics et al. 2017. Ljungan/Sebokele-like picornavirus in birds of prey, common kestrel
(Falco tinnunculus) and red-footed falcon (F. vespertinus).
Infect. Genet. Evol. 55, 14-19. |
|
Parechovirus F |
GPeV |
gecko parechovirus (Yili Teratoscincus roborowskii picornavirus 2)
strain LPWC210215 |
7471 nt |
MG600084 |
Shi et al. 2018. The evolutionary history of vertebrate RNA viruses.
Nature 556 (7700), 197-202. |