Genus Salivirus

Genus Salivirus presently comprises 1 species, Salivirus A, with 2 types.

Genome layout: VPg-5'UTRIRES-V[L/1AB-1C-1D/2AH-box/NC-2B-2Chel/3A-3B VPg-3Cpro-3Dpol]3'UTR-poly(A)

This compilation is not comprehensive. There are more than 475 GenBank entries (as of 22 October 2018) !

Species

Type

Strain

Length

Acc. No.

Reference

Salivirus A

SaV-A1

salivirus A1 strain NG-J1 (human/Nigeria/2007)

7982 nt

GQ179640

Li et al. 2009. A novel picornavirus associated with gastroenteritis J Virol 83(22):12002-12006.

NC_012957

Li et al. 2009. A novel picornavirus associated with gastroenteritis J Virol 83(22):12002-12006.

SaV-A1

salivirus A1 strain NG-F1 (human/Nigeria/2007)

6971 nt

GQ507022

Li et al. 2009. A novel picornavirus associated with gastroenteritis J Virol 83(22):12002-12006.

SaV-A1

salivirus A1 strain klassevirus 02394-01 (human/USA/2002)

7982 nt

GQ184145

Greninger et al. 2009. The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virol J 6:82.

NC_012986

Greninger et al. 2009. The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virol J 6:82.

SaV-A1

salivirus A1 strain klassevirus (human/Australia/1984)

6404 nt

GQ253930

Holtz et al. 2009. Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread. Virol J 6:86.

SaV-A1

salivirus A1 strain SH1 (human/China/2009)

7798 nt

GU245894

Shan et al. 2010. Picornavirus salivirus/klassevirus in children with diarrhea, China. Emerging Infect Dis 16(8):1303-1305.

SaV-A1

salivirus A1 strain CH (chimpanzee/China/2011)

7798 nt

JN379039

Lan & Hua, unpublished

SaV-A1

salivirus A1 strain BN-2 (human/Germany/2013)

7990 nt

KP247439

Aldabbagh et al. 2015. Salivirus type 1 and type 2 in patients with acute gastroenteritis, Germany. J Clin Virol 72:16-19.

SaV-A1

salivirus A1 strain SZ-1 (human/China/2013)

7633 nt

KT182636

Pei et al. 2016. Complete Genome Sequence of a Salivirus in Respiratory Specimens from a Child with Adenovirus Infection. Genome Announc 4(2):e00159-16.

SaV-A1

salivirus A1 strain Hu/Baja-5332/2013/HUN (human/Hungary/2013)

8021 nt

KT240115

Boros et al. 2016. A cluster of salivirus A1 (Picornaviridae) infections in newborn babies with acute gastroenteritis in a neonatal hospital unit in Hungary. Arch Virol 161(6):1671-1677.

SaV-A1

salivirus A1 strain GUT/2009/A-1746 (human/Guatemala/2009)

7952 nt

KT310068

Ng et al. 2016. Characterization of a Salivirus (Picornaviridae) from a Diarrheal Child in Guatemala. Genome Announc 4(1):e01751-15.

SaV-A1

salivirus A1 strain ETH_P28_2016 (human/Ethiopia/2016)

7828 nt

MG026496

Altan et al. 2018. Enteric virome of Ethiopian children participating in a clean water intervention trial. PLoS ONE 13(8):e0202054.

SaV-A1

salivirus A1 strain ETH_P14_2016 (human/Ethiopia/2016)

7603 nt

MG026495

Altan et al. 2018. Enteric virome of Ethiopian children participating in a clean water intervention trial. PLoS ONE 13(8):e0202054.

SaV-A1

salivirus A1 strain ETH_P6_2016 (human/Ethiopia/2016)

6866 nt

MG026494

Altan et al. 2018. Enteric virome of Ethiopian children participating in a clean water intervention trial. PLoS ONE 13(8):e0202054.

SaV-A1

salivirus A1 strain ETH_P2_2016 (human/Ethiopia/2016)

6926 nt

MG026493

Altan et al. 2018. Enteric virome of Ethiopian children participating in a clean water intervention trial. PLoS ONE 13(8):e0202054.

SaV-A2

FHB (human/China/2011)

7998 nt

KM023140

Yu et al. 2015. Salivirus in Children and Its Association with Childhood Acute Gastroenteritis: A Paired Case-Control Study. PLoS ONE 10(7):e0130977.

NC_025114

Yu et al. 2015. Salivirus in Children and Its Association with Childhood Acute Gastroenteritis: A Paired Case-Control Study. PLoS ONE 10(7):e0130977.

SaV-A2

BN-5 (human/Germany/2013)

7998 nt

KP247440

Aldabbagh et al. 2015. Salivirus type 1 and type 2 in patients with acute gastroenteritis, Germany. J Clin Virol 72:16-19.

SaV-A2

SaliV-SewBKK (sewage/Thailand/2009)

6396 nt

JQ898343

Ng et al. 2012. High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage. J Virol 86(22):12161-12175.




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