Genus Sapelovirus

Genus Sapelovirus presently comprises 2 species:

Genome layout: VPg-5'UTRIRES-IV[L/1A-1B-1C-1D/2A-2B-2Chel/3A-3BVPg- 3Cpro-3Dpol]3'UTR-poly(A)

This compilation is not comprehensive. There are more than 325 GenBank entries (as of 22 October 2018) !

Go to unclassified sapelo-like viruses


Species

Type

Strain

Length

Acc. No.

Reference

Sapelovirus A

PSV

porcine sapelovirus V13

7491 nt

AF406813

Krumbholz et al. 2002. Sequencing of porcine enterovirus groups II and III reveals unique features of both virus groups. J. Virol. 76 (11), 5813-5821.

7491 nt

NC_003987

Krumbholz et al. 2002. Sequencing of porcine enterovirus groups II and III reveals unique features of both virus groups. J. Virol. 76 (11), 5813-5821.

1417 nt (3D)

AJ001391

Peng et al. 1997. Unpublished.

PSV

porcine sapelovirus Po 5116 (pig/Germany)

3969 nt (L-VP4-VP2-VP3-VP2-2A)

AY392538

Zell et al. 2003. Unpublished.

PSV

porcine sapelovirus 16-S-X (pig/Hungary)

3699 nt (L-VP4-VP2-VP3-VP2-2A)

AY392543

Zell et al. 2003. Unpublished.

PSV

porcine sapelovirus 26-T-XII (pig/Hungary)

3688 nt (L-VP4-VP2-VP3-VP2-2A)

AY392544

Zell et al. 2003. Unpublished.

PSV

porcine sapelovirus 38-V-II (pig/Hungary)

751 nt (L-VP4)

AY392545

Zell et al. 2003. Unpublished.

PSV

porcine sapelovirus Sek 1562/98 (pig/Germany/1998)

3968 nt (L-VP4-VP2-VP3-VP2-2A)

AY392556

Zell et al. 2003. Unpublished.

PSV

porcine sapelovirus csh (pig/China/2009)

7502 nt

HQ875059

Wang et al. 2014. Rapid and real-time detection of Porcine Sapelovirus by reverse transcription loop-mediated isothermal amplification assay. J. Virol. Methods 203, 5-8.

PSV

porcine sapelovirus YC2011 (pig/China/2011)

7572 nt

JX286666

Chen et al. 2012. Complete Genome Sequence of a Novel Porcine Sapelovirus Strain YC2011 Isolated from Piglets with Diarrhea. J. Virol. 86 (19), 10898.

PSV

porcine sapelovirus JD2011 (pig/China/2011)

7572 nt

KF539414

Chen et al. 2013. Unpublished.

PSV

porcine sapelovirus QT2013 (pig/China/2013)

7532 nt

KJ463384

Chen et al. 2013. Unpublished.

PSV

porcine sapelovirus KS04105 (pig/South Korea/2004)

7542 nt

KJ821019

Son et al. 2014. Full-length genomic analysis of korean porcine sapelovirus strains. PLoS ONE 9 (9), e107860.

PSV

porcine sapelovirus KS05151 (pig/South Korea/2005)

7566 nt

KJ821020

Son et al. 2014. Full-length genomic analysis of korean porcine sapelovirus strains. PLoS ONE 9 (9), e107860.

PSV

porcine sapelovirus KS055217 (pig/South Korea/2005)

7542 nt

KJ821021

Son et al. 2014. Full-length genomic analysis of korean porcine sapelovirus strains. PLoS ONE 9 (9), e107860.

PSV

porcine sapelovirus P1-3-3

839 nt (VP1)

KU557668

Vilar et al. 2016. Distribution and genetic characterization of Enterovirus G and Sapelovirus A in six Spanish swine herds. Virus Res. In press.

1386 nt (3D)

KU557669

Vilar et al. 2016. Distribution and genetic characterization of Enterovirus G and Sapelovirus A in six Spanish swine herds. Virus Res. In press.

PSV

porcine sapelovirus HuN1 (pig/China/2015)

6996 nt

KX354740

Yang et al. 2016. Unpublished.

PSV

porcine sapelovirus HuN2 (pig/China/2015)

6996 nt

KX354741

Yang et al. 2016. Unpublished.

PSV

porcine sapelovirus HuN3 (pig/China/2015)

6996 nt

KX354742

Yang et al. 2016. Unpublished.

PSV

porcine sapelovirus HuN4 (pig/China/2015)

6996 nt

KX354743

Yang et al. 2016. Unpublished.

PSV

porcine sapelovirus USA/IA33375/2015 (pig/USA/2015)

7565 nt

KX574284

Chen et al. 2016. Unpublished.

PSV

porcine sapelovirus strain Gifu virus (wild boar/Japan)

855 nt (VP1)

AB619806

Abe et al. 2011. A novel sapelovirus-like virus isolation from wild boar. Virus Genes 43 (2), 243-248.

300 nt (3A par)

AB609605

Abe et al. 2011. A novel sapelovirus-like virus isolation from wild boar. Virus Genes 43 (2), 243-248

PSV

porcine sapelovirus IVRI/PSV/SPF/C-6/2015

7491 nt

KY053835

Ray et al. 2018. Transbound Emerg Dis 65(1):261-263.

PSV

porcine sapelovirus OPY-1-Corsica-2017 (PLC/PRF/5) (France/2017)

7532 nt

MH513612

Piorkowski et al. unpublished.

PSV

porcine sapelovirus Jpsv447 (Japan/2009)

7582 nt

LC326556

Bai et al. 2018. Transbound Emerg Dis 65(3):727-734.

PSV

porcine sapelovirus Jpsv1315 (Japan/2009)

7569 nt

LC326555

Bai et al. 2018. Transbound Emerg Dis 65(3):727-734.

PSV

porcine sapelovirus HuN5 (China/2016)

7218 nt

MH440633

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN6 (China/2016)

7210 nt

MH440634

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN7 (China/2016)

7264 nt

MH440635

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN8 (China/2016)

7222 nt

MH440636

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN9 (China/2016)

7245 nt

MH440637

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN11 (China/2016)

7231 nt

MH440639

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN12 (China/2016)

7227 nt

MH440640

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN13 (China/2016)

7254 nt

MH440641

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN14 (China/2016)

7252 nt

MH440642

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN15 (China/2016)

7221 nt

MH440643

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN16 (China/2016)

7227 nt

MH440644

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN17 (China/2016)

7258 nt

MH440645

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN18 (China/2016)

7225 nt

MH440646

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN19 (China/2017)

7253 nt

MH440647

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN20 (China/2017)

7223 nt

MH440648

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN21 (China/2017)

7230 nt

MH440649

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN22 (China/2017)

7229 nt

MH440650

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN23 (China/2017)

7221 nt

MH440651

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN24 (China/2017)

7221 nt

MH440652

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN25 (China/2017)

7254 nt

MH440653

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN26 (China/2017)

7266 nt

MH440654

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN27 (China/2017)

7275 nt

MH440655

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN28 (China/2017)

7275 nt

MH440656

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN29 (China/2017)

7220 nt

MH440657

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN30 (China/2017)

7259 nt

MH440658

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN31 (China/2017)

7232 nt

MH440659

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN32 (China/2017)

7227 nt

MH440660

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus HuN33 (China/2014)

7222 nt

MH440661

Yang et al. 2017. Molecular characterization of porcine sapelovirus in Hunan, China. J. Gen. Virol. 98(11):2738-2747.

PSV

porcine sapelovirus USA/IA33375/2015

7565 nt

KX574284

Chen et al., unpublished.

PSV

porcine sapelovirus GER/L00798-K11_14-02/2014

7499 nt

LT900497

A. Pohlmann, unpublished.

PSV

porcine sapelovirus ISU-SHIC (USA/2016)

7389 nt

KX810827

Arruda et al. 2017. Detection of a novel sapelovirus in central nervous tissue of pigs with polioencephalomyelitis in the USA. Transbound Emerg. Dis. 64(2):311-315.

Sapelovirus B

SSV-1

simian sapelovirus 1 2382 (simian virus 2)

8126 nt

AY064708

Oberste et al. 2002. Genomic evidence that simian virus 2 and six other simian picornaviruses represent a new genus in Picornaviridae. Virology 314 (1), 283-293.

8126 nt

NC_004451

Oberste et al. 2002. Genomic evidence that simian virus 2 and six other simian picornaviruses represent a new genus in Picornaviridae. Virology 314 (1), 283-293.

852 nt (VP1)

AF326755

Oberste et al. 2002. Molecular phylogeny and proposed classification of the simian picornaviruses. J. Virol. 76 (3), 1244-1251.

SSV-2

simian sapelovirus 2 P19 (simian virus 49)

876 nt (VP1)

AF326765

Oberste et al. 2002. Molecular phylogeny and proposed classification of the simian picornaviruses. J. Virol. 76 (3), 1244-1251.

SSV-2

simian sapelovirus 2 VRDL1

7971 nt

EU789367

Victoria et al. 2008. Rapid identification of known and new RNA viruses from animal tissues. PLoS Pathog. 4 (9), e1000163.

SSV-3

simian sapelovirus 3 2450-SD (simian virus 16)

879 nt (VP1)

AF326752

Oberste et al. 2002. Molecular phylogeny and proposed classification of the simian picornaviruses. J. Virol. 76 (3), 1244-1251.

SSV-3

simian sapelovirus 3 2481 B-2 (simian virus 18)

873 nt (VP1)

AF326753

Oberste et al. 2002. Molecular phylogeny and proposed classification of the simian picornaviruses. J. Virol. 76 (3), 1244-1251.

SSV-3

simian sapelovirus 3 P1 (simian virus 42)

888 nt (VP1)

AF326760

Oberste et al. 2002. Molecular phylogeny and proposed classification of the simian picornaviruses. J. Virol. 76 (3), 1244-1251.

SSV-3

simian sapelovirus 3 P13 (simian virus 44)

885 nt (VP1)

AF326762

Oberste et al. 2002. Molecular phylogeny and proposed classification of the simian picornaviruses. J. Virol. 76 (3), 1244-1251.

SSV-3

simian sapelovirus 3 P14 (simian virus 45)

879 nt (VP1)

AF326763

Oberste et al. 2002. Molecular phylogeny and proposed classification of the simian picornaviruses. J. Virol. 76 (3), 1244-1251.

SSV-3

simian sapelovirus 3 WUHARV sapelovirus 1 (rhesus monkey/USA/2010)

8059 nt

JX627573

Handley et al. 2012. Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome. Cell 151 (2), 253-266.

SSV-3

simian sapelovirus 3 WUHARV sapelovirus 2 (rhesus monkey/USA/2010)

8025 nt

JX627574

Handley et al. 2012. Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome. Cell 151 (2), 253-266.




26 unclassified sapelo-like viruses:

Species

Type

Strain

Length

Acc. No.

Reference

Sapelo-like viruses

mouse sapelovirus M-58/USA/2008

621 nt

JF755421

Phan et al. 2011. The fecal viral flora of wild rodents. PLoS Pathog. 7 (9), e1002218.

California sea lion sapelovirus 1 1162 (Zalophus californianus/USA/2010)

6549 nt

JN420368

Li et al. 2011. The fecal viral flora of california sea lions. J. Virol. 85 (19), 9909-9917.

California sea lion sapelovirus 2 1153 (Zalophus californianus/USA/2010)

5991 nt

JN420367

Li et al. 2011. The fecal viral flora of california sea lions. J. Virol. 85 (19), 9909-9917.

canine picornavirus 325F (dog/Hong Kong/2008)

7948 nt

JN831356

Woo et al. 2012. Complete genome sequence of a novel picornavirus, canine picornavirus, discovered in dogs. J. Virol. 86 (6), 3402-3403.

Ia io picornavirus 1 (Ia io/China/2010)

7543 nt

JQ814852

Wu et al. 2012. Virome analysis for identification of novel Mammalian viruses in bat species from chinese provinces. J. Virol. 86 (20), 10999-11012.

bat picornavirus BtRs-PicoV/YN2010 (Rhinolophus sinicus/China/2010)

7830 nt

KJ641694

Wu et al. 2014. Unpublished.

bat picornavirus BtMa-PicoV/FJ2012 (Myotis altarium/China/2012)

7830 nt

KJ641689

Wu et al. 2014. Unpublished.

bat picornavirus BtVs-PicoV/SC2013 (Vespertilio superans/China/2013)

7331 nt

KJ641696

Wu et al. 2014. Unpublished.

bat picornavirus BtNv-PicoV/SC2013 (Nyctalus velutinus/China/2013)

7048 nt

KJ641697

Wu et al. 2014. Unpublished.

bat picornavirus BtRa-PicoV/JS2013 (Rhinolophus affinis/China/2013)

5652 nt

KJ641692

Wu et al. 2014. Unpublished.

bat picornavirus BtRlep-PicoV/FJ2012 (Rhinolophus lepidus/China/2012)

5661 nt

KJ641688

Wu et al. 2014. Unpublished.

bat picornavirus BtRf-PicoV-1/YN2012 (Rhinolophus ferrumequinum/China/2012)

6624 nt

KJ641685

Wu et al. 2014. Unpublished.

bat picornavirus BtMf-PicoV-1/GD2012 (Miniopterus fuliginosus/China/2012)

6879 nt

KJ641690

Wu et al. 2014. Unpublished.

bat picornavirus BtMf-PicoV/FJ2012 (Miniopterus fuliginosus/China/2012)

7435 nt

KJ641687

Wu et al. 2014. Unpublished.

bat picornavirus BtMf-PicoV-2/SAX2011 (Miniopterus fuliginosus/China/2011)

7145 nt

KJ641699

Wu et al. 2014. Unpublished.

bat picornavirus BtRh-PicoV/SC2013 (Rhinolophus hipposideros/China/2013)

7345 nt

KJ641693

Wu et al. 2014. Unpublished.

bat picornavirus 3 TLC21F (Hipposideros armiger/Hong Kong/2008)

7672 nt

HQ595345

Lau et al. 2010. Complete genome analysis of three novel picornaviruses from diverse bat species. J. Virol. 85 (17), 8819-8828.

bat picornavirus 3 TLC5F (Rhinolophus sinicus/Hong Kong/2008)

7749 nt

HQ595344

Lau et al. 2010. Complete genome analysis of three novel picornaviruses from diverse bat species. J. Virol. 85 (17), 8819-8828.

bat picornavirus 2 SK17F (Miniopterus magnater/Hong Kong/2005)

7625 nt

HQ595343

Lau et al. 2010. Complete genome analysis of three novel picornaviruses from diverse bat species. J. Virol. 85 (17), 8819-8828.

bat picornavirus 2 MH9F (Miniopterus magnater/Hong Kong/2005)

7693 nt

HQ595342

Lau et al. 2010. Complete genome analysis of three novel picornaviruses from diverse bat species. J. Virol. 85 (17), 8819-8828.

bat picornavirus 2 LMH22A (Miniopterus schreibersii/Hong Kong/2005)

7641 nt

HQ595341

Lau et al. 2010. Complete genome analysis of three novel picornaviruses from diverse bat species. J. Virol. 85 (17), 8819-8828.

bat picornavirus 2 NC16A (Miniopterus pusillus/Hong Kong/2008)

7753 nt

HQ595340

Lau et al. 2010. Complete genome analysis of three novel picornaviruses from diverse bat species. J. Virol. 85 (17), 8819-8828.

bat sapelovirus (Eidolon helvum/Cameroon/2014)

KX644938

Yinda et al. 2017. Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats. BMC Genomics 18(1):249.

pigeon picornavirus A 03/603-7 (feral pigeon/Norway/2003)

2828 nt

FR727145

Kofstad & Jonassen. 2011. Screening of feral and wood pigeons for viruses harbouring a conserved mobile viral element: characterization of novel astroviruses and picornaviruses. PLoS ONE 6 (10), e25964.

pigeon picornavirus B 03/641 (feral pigeon/Norway/2003)

7801 nt

FR727144

Kofstad & Jonassen. 2011. Screening of feral and wood pigeons for viruses harbouring a conserved mobile viral element: characterization of novel astroviruses and picornaviruses. PLoS ONE 6 (10), e25964.

pigeon picornavirus B GAL-7/2010/Hungary (feral pigeon Columba livia)

7971 nt

KC560801

Reuter et al. 2014. Unpublished.




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